Clone Name | rbastl13b09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 103 bits (52), Expect = 4e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 240 ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299 ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 115528 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 115469 Query: 300 gcatgctttccagctttggcacgagcagcttcatca 335 |||||| |||||||| ||||||||||| |||||| Sbjct: 115468 gcatgcacgccagctttagcacgagcagcctcatca 115433
>dbj|AK099796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097H06, full insert sequence Length = 3673 Score = 103 bits (52), Expect = 4e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 240 ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299 ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343 Query: 300 gcatgctttccagctttggcacgagcagcttcatca 335 |||||| |||||||| ||||||||||| |||||| Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatca 3307
>dbj|AK100624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108I24, full insert sequence Length = 3669 Score = 103 bits (52), Expect = 4e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 240 ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299 ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343 Query: 300 gcatgctttccagctttggcacgagcagcttcatca 335 |||||| |||||||| ||||||||||| |||||| Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatca 3307
>dbj|AK062108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B04, full insert sequence Length = 1434 Score = 103 bits (52), Expect = 4e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 240 ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299 ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 1182 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 1123 Query: 300 gcatgctttccagctttggcacgagcagcttcatca 335 |||||| |||||||| ||||||||||| |||||| Sbjct: 1122 gcatgcacgccagctttagcacgagcagcctcatca 1087
>ref|XM_450769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3772 Score = 85.7 bits (43), Expect = 9e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 221 ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280 |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353 Query: 281 attcttgtcca 291 ||||||||| Sbjct: 3352 ggtcttgtcca 3342
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 85.7 bits (43), Expect = 9e-14 Identities = 64/71 (90%) Strand = Plus / Plus Query: 221 ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280 |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct: 12677388 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 12677447 Query: 281 attcttgtcca 291 ||||||||| Sbjct: 12677448 ggtcttgtcca 12677458 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 283 tcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatca 335 |||||||||||| ||| |||||| |||||||| |||||||||||||||||| Sbjct: 19184554 tcttgtccagcatagaggcatgcacgccagctttagcacgagcagcttcatca 19184502
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 85.7 bits (43), Expect = 9e-14 Identities = 64/71 (90%) Strand = Plus / Plus Query: 221 ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280 |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct: 143326 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 143385 Query: 281 attcttgtcca 291 ||||||||| Sbjct: 143386 ggtcttgtcca 143396
>dbj|AK068860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D12, full insert sequence Length = 3772 Score = 85.7 bits (43), Expect = 9e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 221 ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280 |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353 Query: 281 attcttgtcca 291 ||||||||| Sbjct: 3352 ggtcttgtcca 3342
>gb|AC131729.3| Mus musculus BAC clone RP23-125B15 from 5, complete sequence Length = 209715 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 attatgattgctaaaaaccatg 48 |||||||||||||||||||||| Sbjct: 117023 attatgattgctaaaaaccatg 117002
>gb|AC131337.16| Mus musculus chromosome 15, clone RP23-480E1, complete sequence Length = 190303 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 cagtgagaagacaaaaataagttttgag 177 ||||||||||| |||||||| ||||||| Sbjct: 148811 cagtgagaagaaaaaaataaattttgag 148784
>ref|XM_417954.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1200009H11 (LOC419818), mRNA Length = 1413 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 caaagttctgtgagaagatt 205 |||||||||||||||||||| Sbjct: 512 caaagttctgtgagaagatt 531
>gb|AC126668.3| Mus musculus BAC clone RP24-370N20 from chromosome 7, complete sequence Length = 179246 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 aagacaaaaataagttttga 176 |||||||||||||||||||| Sbjct: 71596 aagacaaaaataagttttga 71615
>emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chromosome 9q21.31-22.1 Contains a novel gene, complete sequence Length = 186246 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 taatatgcagtgagaagaca 162 |||||||||||||||||||| Sbjct: 96737 taatatgcagtgagaagaca 96756
>emb|AL627129.8| Zebrafish DNA sequence from clone RP71-1F1 in linkage group 24 Contains a novel gene for a protein similar to acyl-CoA thioester hydrolases, a novel gene similar to human SAT (spermidine/spermine N1-acetyltransferase), two novel genes, three novel genes for proteins similar to arylamine N-acetyltransferases, a novel gene similar to human ASP (AKAP-associated sperm protein), the 3' part of the dap1a gene for death associated protein 1a and a CpG island, complete sequence Length = 141894 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acacaaaactacaacagaat 75 |||||||||||||||||||| Sbjct: 13591 acacaaaactacaacagaat 13610
>gb|AC084152.1| Caenorhabditis elegans cosmid Y102A11A, complete sequence Length = 54345 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 acacaaaactacaacagaatctaa 79 |||||||||||||||||| ||||| Sbjct: 51732 acacaaaactacaacagactctaa 51709
>dbj|AK148673.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120433C22 product:unclassifiable, full insert sequence Length = 2060 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 cagtgagaagacaaaaataagttttgag 177 ||||||||||| |||||||| ||||||| Sbjct: 1006 cagtgagaagaaaaaaataaattttgag 979
>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence Length = 132573 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 attctgggcttcaaactcct 237 |||||||||||||||||||| Sbjct: 69749 attctgggcttcaaactcct 69768
>emb|CR338830.1| Gallus gallus finished cDNA, clone ChEST974l3 Length = 887 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 caaagttctgtgagaagatt 205 |||||||||||||||||||| Sbjct: 406 caaagttctgtgagaagatt 425
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctaaaaaccatgtcctcaga 56 |||||||||||||||||||| Sbjct: 20036283 ctaaaaaccatgtcctcaga 20036302
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 catgtcctcagacacaaaac 64 |||||||||||||||||||| Sbjct: 32501 catgtcctcagacacaaaac 32482
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 catgtcctcagacacaaaac 64 |||||||||||||||||||| Sbjct: 30303 catgtcctcagacacaaaac 30284
>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1657_A07 Length = 125217 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctaaaaaccatgtcctcaga 56 |||||||||||||||||||| Sbjct: 886 ctaaaaaccatgtcctcaga 905
>emb|BX004771.6| Zebrafish DNA sequence from clone CH211-112I15 in linkage group 24, complete sequence Length = 167345 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 agtgagaagacaaaaataagtttt 174 ||||||| |||||||||||||||| Sbjct: 56637 agtgagatgacaaaaataagtttt 56660
>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete sequences Length = 207747 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aaaccactaatatgcagtga 155 |||||||||||||||||||| Sbjct: 13611 aaaccactaatatgcagtga 13630
>dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, map 22, complete sequences Length = 220932 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aaaccactaatatgcagtga 155 |||||||||||||||||||| Sbjct: 217529 aaaccactaatatgcagtga 217548
>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1793_E11 Length = 101342 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctaaaaaccatgtcctcaga 56 |||||||||||||||||||| Sbjct: 69843 ctaaaaaccatgtcctcaga 69862
>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence Length = 189381 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 agaagacaaaaataagtttt 174 |||||||||||||||||||| Sbjct: 86453 agaagacaaaaataagtttt 86472
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 catgtcctcagacacaaaac 64 |||||||||||||||||||| Sbjct: 17431 catgtcctcagacacaaaac 17412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,805,705 Number of Sequences: 3902068 Number of extensions: 3805705 Number of successful extensions: 70302 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70181 Number of HSP's gapped (non-prelim): 121 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)