ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 103 4e-19
2dbj|AK099796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
3dbj|AK100624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
4dbj|AK062108.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
5ref|XM_450769.1| Oryza sativa (japonica cultivar-group), mRNA 86 9e-14
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
7dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
8dbj|AK068860.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 9e-14
9gb|AC131729.3| Mus musculus BAC clone RP23-125B15 from 5, comple... 44 0.31
10gb|AC131337.16| Mus musculus chromosome 15, clone RP23-480E1, co... 40 4.9
11ref|XM_417954.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 4.9
12gb|AC126668.3| Mus musculus BAC clone RP24-370N20 from chromosom... 40 4.9
13emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chr... 40 4.9
14emb|AL627129.8| Zebrafish DNA sequence from clone RP71-1F1 in li... 40 4.9
15gb|AC084152.1| Caenorhabditis elegans cosmid Y102A11A, complete ... 40 4.9
16dbj|AK148673.1| Mus musculus 2 days neonate sympathetic ganglion... 40 4.9
17gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, comple... 40 4.9
18emb|CR338830.1| Gallus gallus finished cDNA, clone ChEST974l3 40 4.9
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
21dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
22dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
23emb|BX004771.6| Zebrafish DNA sequence from clone CH211-112I15 i... 40 4.9
24dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, ... 40 4.9
25dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, ... 40 4.9
26dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
27gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, comple... 40 4.9
28dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9

>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBb0004A05, complete sequence
          Length = 157913

 Score =  103 bits (52), Expect = 4e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                          
Query: 240    ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299
              ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 115528 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 115469

                                                  
Query: 300    gcatgctttccagctttggcacgagcagcttcatca 335
              ||||||   |||||||| ||||||||||| ||||||
Sbjct: 115468 gcatgcacgccagctttagcacgagcagcctcatca 115433



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>dbj|AK099796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097H06, full
            insert sequence
          Length = 3673

 Score =  103 bits (52), Expect = 4e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                        
Query: 240  ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299
            ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343

                                                
Query: 300  gcatgctttccagctttggcacgagcagcttcatca 335
            ||||||   |||||||| ||||||||||| ||||||
Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatca 3307



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>dbj|AK100624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108I24, full
            insert sequence
          Length = 3669

 Score =  103 bits (52), Expect = 4e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                        
Query: 240  ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299
            ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343

                                                
Query: 300  gcatgctttccagctttggcacgagcagcttcatca 335
            ||||||   |||||||| ||||||||||| ||||||
Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatca 3307



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>dbj|AK062108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B04, full
            insert sequence
          Length = 1434

 Score =  103 bits (52), Expect = 4e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                        
Query: 240  ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 299
            ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 1182 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 1123

                                                
Query: 300  gcatgctttccagctttggcacgagcagcttcatca 335
            ||||||   |||||||| ||||||||||| ||||||
Sbjct: 1122 gcatgcacgccagctttagcacgagcagcctcatca 1087



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>ref|XM_450769.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3772

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 221  ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280
            |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353

                       
Query: 281  attcttgtcca 291
              |||||||||
Sbjct: 3352 ggtcttgtcca 3342



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 221      ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280
                |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 12677388 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 12677447

                           
Query: 281      attcttgtcca 291
                  |||||||||
Sbjct: 12677448 ggtcttgtcca 12677458



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 283      tcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatca 335
                |||||||||||| ||| ||||||   |||||||| ||||||||||||||||||
Sbjct: 19184554 tcttgtccagcatagaggcatgcacgccagctttagcacgagcagcttcatca 19184502



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>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0041C07
          Length = 179047

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                          
Query: 221    ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280
              |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 143326 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 143385

                         
Query: 281    attcttgtcca 291
                |||||||||
Sbjct: 143386 ggtcttgtcca 143396



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>dbj|AK068860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D12, full
            insert sequence
          Length = 3772

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 221  ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 280
            |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353

                       
Query: 281  attcttgtcca 291
              |||||||||
Sbjct: 3352 ggtcttgtcca 3342



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>gb|AC131729.3| Mus musculus BAC clone RP23-125B15 from 5, complete sequence
          Length = 209715

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 27     attatgattgctaaaaaccatg 48
              ||||||||||||||||||||||
Sbjct: 117023 attatgattgctaaaaaccatg 117002



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>gb|AC131337.16| Mus musculus chromosome 15, clone RP23-480E1, complete sequence
          Length = 190303

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 150    cagtgagaagacaaaaataagttttgag 177
              ||||||||||| |||||||| |||||||
Sbjct: 148811 cagtgagaagaaaaaaataaattttgag 148784



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>ref|XM_417954.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1200009H11
           (LOC419818), mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 caaagttctgtgagaagatt 205
           ||||||||||||||||||||
Sbjct: 512 caaagttctgtgagaagatt 531



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>gb|AC126668.3| Mus musculus BAC clone RP24-370N20 from chromosome 7, complete sequence
          Length = 179246

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aagacaaaaataagttttga 176
             ||||||||||||||||||||
Sbjct: 71596 aagacaaaaataagttttga 71615



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>emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chromosome 9q21.31-22.1
             Contains a novel gene, complete sequence
          Length = 186246

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   taatatgcagtgagaagaca 162
             ||||||||||||||||||||
Sbjct: 96737 taatatgcagtgagaagaca 96756



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>emb|AL627129.8| Zebrafish DNA sequence from clone RP71-1F1 in linkage group 24 Contains
             a novel gene for a protein similar to acyl-CoA thioester
             hydrolases, a novel gene similar to human SAT
             (spermidine/spermine N1-acetyltransferase), two novel
             genes, three novel genes for proteins similar to arylamine
             N-acetyltransferases, a novel gene similar to human ASP
             (AKAP-associated sperm protein), the 3' part of the dap1a
             gene for death associated protein 1a and a CpG island,
             complete sequence
          Length = 141894

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    acacaaaactacaacagaat 75
             ||||||||||||||||||||
Sbjct: 13591 acacaaaactacaacagaat 13610



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>gb|AC084152.1| Caenorhabditis elegans cosmid Y102A11A, complete sequence
          Length = 54345

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    acacaaaactacaacagaatctaa 79
             |||||||||||||||||| |||||
Sbjct: 51732 acacaaaactacaacagactctaa 51709



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>dbj|AK148673.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120433C22
            product:unclassifiable, full insert sequence
          Length = 2060

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 150  cagtgagaagacaaaaataagttttgag 177
            ||||||||||| |||||||| |||||||
Sbjct: 1006 cagtgagaagaaaaaaataaattttgag 979



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>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence
          Length = 132573

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   attctgggcttcaaactcct 237
             ||||||||||||||||||||
Sbjct: 69749 attctgggcttcaaactcct 69768



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>emb|CR338830.1| Gallus gallus finished cDNA, clone ChEST974l3
          Length = 887

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 caaagttctgtgagaagatt 205
           ||||||||||||||||||||
Sbjct: 406 caaagttctgtgagaagatt 425



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       ctaaaaaccatgtcctcaga 56
                ||||||||||||||||||||
Sbjct: 20036283 ctaaaaaccatgtcctcaga 20036302



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    catgtcctcagacacaaaac 64
             ||||||||||||||||||||
Sbjct: 32501 catgtcctcagacacaaaac 32482



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>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672D08
          Length = 173729

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    catgtcctcagacacaaaac 64
             ||||||||||||||||||||
Sbjct: 30303 catgtcctcagacacaaaac 30284



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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:OJ1657_A07
          Length = 125217

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  ctaaaaaccatgtcctcaga 56
           ||||||||||||||||||||
Sbjct: 886 ctaaaaaccatgtcctcaga 905



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>emb|BX004771.6| Zebrafish DNA sequence from clone CH211-112I15 in linkage group 24,
             complete sequence
          Length = 167345

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 151   agtgagaagacaaaaataagtttt 174
             ||||||| ||||||||||||||||
Sbjct: 56637 agtgagatgacaaaaataagtttt 56660



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>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete
             sequences
          Length = 207747

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   aaaccactaatatgcagtga 155
             ||||||||||||||||||||
Sbjct: 13611 aaaccactaatatgcagtga 13630



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>dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, map 22, complete
              sequences
          Length = 220932

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    aaaccactaatatgcagtga 155
              ||||||||||||||||||||
Sbjct: 217529 aaaccactaatatgcagtga 217548



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>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1793_E11
          Length = 101342

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ctaaaaaccatgtcctcaga 56
             ||||||||||||||||||||
Sbjct: 69843 ctaaaaaccatgtcctcaga 69862



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>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   agaagacaaaaataagtttt 174
             ||||||||||||||||||||
Sbjct: 86453 agaagacaaaaataagtttt 86472



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>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0402A09
          Length = 141966

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    catgtcctcagacacaaaac 64
             ||||||||||||||||||||
Sbjct: 17431 catgtcctcagacacaaaac 17412


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,805,705
Number of Sequences: 3902068
Number of extensions: 3805705
Number of successful extensions: 70302
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70181
Number of HSP's gapped (non-prelim): 121
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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