ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 29 3.9
2ISIA_SYNP7 (P15347) Iron stress-induced chlorophyll-binding prot... 28 8.8
3ISIA_SYNP6 (Q5N675) Iron stress-induced chlorophyll-binding prot... 28 8.8
4ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex e... 28 8.8

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 181 MVMEMGIPNSISI 143
           MVMEMGIPNSISI
Sbjct: 924 MVMEMGIPNSISI 936



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>ISIA_SYNP7 (P15347) Iron stress-induced chlorophyll-binding protein (CP43')|
          Length = 342

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 3   GQHIYISSCPLIIIGGSFPLYPPPGQETEDTLIY---A*LSYT 122
           G H+Y+    ++I GG + +  PP Q T+  LIY   A LSY+
Sbjct: 205 GGHVYVGV--MLIAGGIWHILVPPFQWTKKVLIYSGEAILSYS 245



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>ISIA_SYNP6 (Q5N675) Iron stress-induced chlorophyll-binding protein (CP43')|
          Length = 342

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 3   GQHIYISSCPLIIIGGSFPLYPPPGQETEDTLIY---A*LSYT 122
           G H+Y+    ++I GG + +  PP Q T+  LIY   A LSY+
Sbjct: 205 GGHVYVGV--MLIAGGIWHILVPPFQWTKKVLIYSGEAILSYS 245



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>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit|
           2 (ACDS complex epsilon subunit 2)
          Length = 170

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 79  WPGGGYNGNEPPIIIKGHDDIYI 11
           WPG   NGN   II+ GH   YI
Sbjct: 99  WPGLDGNGNYDTIILLGHKKYYI 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,364,267
Number of Sequences: 219361
Number of extensions: 577009
Number of successful extensions: 1345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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