ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (... 28 5.4
2PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2... 28 5.4
3ATR_ASHGO (Q75DB8) Serine/threonine-protein kinase MEC1 (EC 2.7.... 28 7.1
4I28RA_MOUSE (Q8CGK5) Interleukin-28 receptor alpha chain precurs... 28 7.1
5ARMET_DROME (Q9XZ63) ARMET-like protein precursor 28 7.1
6APOM_RAT (P14630) Apolipoprotein M precursor (Apo-M) (ApoM) (Pro... 27 9.2

>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)|
           (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI
           PLA2)
          Length = 751

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 215 NHMVW*STFLFIEKGFRPCFNH 150
           NH  W  T L +E G R CF+H
Sbjct: 115 NHPSWTVTHLAVELGIRECFHH 136



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>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)|
           (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI
           PLA2)
          Length = 752

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 215 NHMVW*STFLFIEKGFRPCFNH 150
           NH  W  T L +E G R CF+H
Sbjct: 116 NHPSWTVTHLAVELGIRECFHH 137



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>ATR_ASHGO (Q75DB8) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase MEC1) (Mitosis entry
            checkpoint protein 1) (ATR homolog)
          Length = 2324

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 300  WLKAKANLSSVQLSNCYFSIIHIGRLANKPY---GLVIYLLVYRKR 172
            WL    N +SVQ+S+ Y  +I + +  ++PY   GL    L+ +KR
Sbjct: 1727 WLDLSNNATSVQISHQYKEVIGLDKDWDEPYYSFGLYYSRLLEKKR 1772



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>I28RA_MOUSE (Q8CGK5) Interleukin-28 receptor alpha chain precursor|
           (IL-28R-alpha) (IL-28RA) (Cytokine receptor family 2
           member 12) (Cytokine receptor class-II member 12)
           (CRF2-12) (Interferon lambda receptor 1) (IFN-lambda R1)
          Length = 535

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 371 EGTSAWRLPGCFLSPRQPSSRPAFG*RLKPTYPPFSCRTVTF 246
           +G S WR+ G   S R           L P  PP S +T+TF
Sbjct: 444 DGLSGWRISGSLSSKRD----------LAPVEPPVSLQTLTF 475



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>ARMET_DROME (Q9XZ63) ARMET-like protein precursor|
          Length = 173

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 111 IDNNTTPRKTRYHMIKTGTKAFFDKQEGRSPNHMVYSLGGLYELSKSNSSTAERRISWL* 290
           +D++T   K  Y  I+T  K F   Q+ +  +   Y LGGL E +    +   + +SW  
Sbjct: 42  LDDST---KKDYKQIETAFKKFCKAQKNKE-HRFCYYLGGLEESATGILNELSKPLSWSM 97

Query: 291 PLAK 302
           P  K
Sbjct: 98  PAEK 101



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>APOM_RAT (P14630) Apolipoprotein M precursor (Apo-M) (ApoM) (Protein Px)|
          Length = 190

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 253 LLFDNSYRPPSE*TIWFGDLPSCLSKKAFV 164
           LL++ S  PP E    F  L SCL  KAF+
Sbjct: 147 LLYNRSPHPPEECVEEFQSLTSCLDFKAFL 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,989,933
Number of Sequences: 219361
Number of extensions: 1013994
Number of successful extensions: 2053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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