>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3148

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 138  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 230
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1577 HQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1607

>SPOT_MYCPN (P75386) Probable guanosine-3',5'-bis(diphosphate)|
           3'-pyrophosphohydrolase (EC 3.1.7.2) ((ppGpp)ase)
           (Penta-phosphate guanosine-3'-pyrophosphohydrolase)
          Length = 733

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = -2

Query: 223 RPRDFCCQALIFTVWQDTAVNKSI-----SNTLCKTVAPRCQKNCHLGHLEAKTFFQQMH 59
           RPR F CQ  I  VW +T VNK +      ++  + + P+  K      L    F    H
Sbjct: 653 RPRKFRCQINIRGVWSETTVNKIVQTIIEGDSYLERIIPKIDKQKDEFELNITMFIDNYH 712

>HD_HUMAN (P42858) Huntingtin (Huntington disease protein) (HD protein)|
          Length = 3144

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 138  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 230
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1584 HQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1614

>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3110

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 138  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 230
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1553 HQVLEMFILVLQQCHKENEDKWKRLSRQVAD 1583

>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3119

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 138  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 230
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1562 HQVLEMFILVLQQCHKENEDKWKRLSRQVAD 1592

>1A12_CUCMA (Q00257) 1-aminocyclopropane-1-carboxylate synthase CMA101 (EC|
           4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine
           methylthioadenosine-lyase)
          Length = 475

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 199 PGSKSHAAWPKNQSHASHEIIGRIHVIYSLQVDKGI 306
           PG  S     K +S    E+  R+H++YSL  D G+
Sbjct: 241 PGFVSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGL 276

>SYT_PROMM (Q7V8D2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 640

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 111 FWHRGATVLHNVLEMLLLTAVSCHTV-NIRAWQQKSRGLAEKSKSCKPRNHW 263
           FWH     ++ VLE  +   +S H    IR  Q   R L EKS       HW
Sbjct: 264 FWHAKGWAIYQVLEQYIRETLSLHDYQEIRTPQVVDRSLWEKS------GHW 309

>UPP_PSEPK (Q88PV2) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP|
           pyrophosphorylase) (UPRTase)
          Length = 212

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  PLNFSNGSSVTKMHLLKKSFCLQMPQMAVFLAPRG 127
           P+  + GS V  + LLKK+ C ++  M +  AP G
Sbjct: 131 PMLATGGSMVATIDLLKKAGCKEIRAMVLVAAPEG 165

>TOP3A_HUMAN (Q13472) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1001

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 1   HLLEQCFASKFLKWQFCNK----DASVEKKFLPPN 93
           HLL   F  +F KWQ CN     +A +E K+ P N
Sbjct: 92  HLLAHDFQMQFRKWQSCNPLVLFEAEIE-KYCPEN 125

>TOP3A_MOUSE (O70157) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1003

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 1   HLLEQCFASKFLKWQFCNK----DASVEKKFLPPN 93
           HLL   F  +F KWQ CN     +A +E K+ P N
Sbjct: 92  HLLAHDFQMQFRKWQSCNPLVLFEAEIE-KYCPEN 125

>RIF1_YEAST (P29539) Protein RIF1 (RAP1-interacting factor 1)|
          Length = 1916

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 174  SCHTVNIRAWQQKSRGLAEKSKSCKPRNHW*NS---CNIQSTGRQRYS*PLQAIQVPSSL 344
            S + +N +++ Q +    +  K  +P N   N+   CN++     R   P   IQ+PS  
Sbjct: 1559 SMNKINSKSFTQDNIAQYKSVKKARPNNEGENNDYACNVEQASPVRNEVPGDGIQIPSGT 1618

Query: 345  L 347
            +
Sbjct: 1619 I 1619


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,196,352
Number of Sequences: 219361
Number of extensions: 1073159
Number of successful extensions: 2618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2618
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)