ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3... 44 0.30
2gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
3gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
4gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosom... 40 4.7
5emb|CR513781.13| Zebrafish DNA sequence from clone CH211-61A15 i... 40 4.7
6emb|AL606611.3|OSJN00044 Oryza sativa genomic DNA, chromosome 4,... 40 4.7
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
9gb|AC102268.11| Mus musculus chromosome 18, clone RP24-248J13, c... 40 4.7

>emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3175A2 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 136603

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 267   aattcatgtaatatacagtcta 288
             ||||||||||||||||||||||
Sbjct: 49539 aattcatgtaatatacagtcta 49560



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>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24,
              complete sequence
          Length = 146492

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    tgttggagatgctcttattg 164
              ||||||||||||||||||||
Sbjct: 133113 tgttggagatgctcttattg 133132



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>gb|AC118286.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
            OJ1384_A02, complete sequence
          Length = 100251

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  tgttggagatgctcttattg 164
            ||||||||||||||||||||
Sbjct: 7380 tgttggagatgctcttattg 7399



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>gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosome 18, complete
             sequence
          Length = 216041

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   aaatcaaagtcatgcaagcc 250
             ||||||||||||||||||||
Sbjct: 46715 aaatcaaagtcatgcaagcc 46696



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>emb|CR513781.13| Zebrafish DNA sequence from clone CH211-61A15 in linkage group 15,
              complete sequence
          Length = 158040

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ctctaaatttctcaaatggc 43
              ||||||||||||||||||||
Sbjct: 107860 ctctaaatttctcaaatggc 107879



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>emb|AL606611.3|OSJN00044 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0043H09,
             complete sequence
          Length = 88824

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   tgttggagatgctcttattg 164
             ||||||||||||||||||||
Sbjct: 28937 tgttggagatgctcttattg 28918



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 145     tgttggagatgctcttattg 164
               ||||||||||||||||||||
Sbjct: 9345566 tgttggagatgctcttattg 9345547



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 145     tgttggagatgctcttattg 164
               ||||||||||||||||||||
Sbjct: 8210892 tgttggagatgctcttattg 8210911



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>gb|AC102268.11| Mus musculus chromosome 18, clone RP24-248J13, complete sequence
          Length = 164012

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    aaatcaaagtcatgcaagcc 250
              ||||||||||||||||||||
Sbjct: 160737 aaatcaaagtcatgcaagcc 160718


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,975,917
Number of Sequences: 3902068
Number of extensions: 2975917
Number of successful extensions: 52471
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52429
Number of HSP's gapped (non-prelim): 42
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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