>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 72   ELDYQGTHCNTSVTSK*AGSPVIH 1
            E+D+     NT  TS  AGSPVIH
Sbjct: 3563 EIDFDDLKANTEYTSYTAGSPVIH 3586

>CYB_DICDI (Q37311) Cytochrome b|
          Length = 389

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 45  YSGYPDNLVLPPSNVLMTHLQPE 113
           Y G+PDN ++  SNV   H+ PE
Sbjct: 250 YLGHPDNYLMADSNVTPAHIVPE 272

>IF2_PHOPR (Q6LUJ2) Translation initiation factor IF-2|
          Length = 899

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 60  DNLVLPPSNVLMTHLQPELGHIAWCTAHPRCDVPREKHLVFGLPGQANIRRIVTVQVRL* 239
           DN+       L++HLQ E G  +      R  + R+ H    + G     + V V+VR  
Sbjct: 35  DNVSQTEKQSLLSHLQKEHGGESTDGTPTRLTLQRKTHSTLSVAGTGGKSKSVQVEVRKK 94

Query: 240 RTY 248
           RT+
Sbjct: 95  RTF 97

>ALYS_BPR1T (Q38135) N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)|
          Length = 270

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 191 WEAKHEVLFPGYVATGVGRAPRDMTQFRL*MSH 93
           W+  + V  PGYVA G G    + + F++ +SH
Sbjct: 63  WDKVYLVGEPGYVAYGAGSPANERSPFQIELSH 95

>TILS_ANAMM (Q5P9R1) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 466

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 32  VTEVLQWVXXXXXXXXVQCTHDSSTTGIGSYRVVHGPPPLRRTQ 163
           + E +QW         + CTH++S     S    H P P   TQ
Sbjct: 352 IAETIQW--DRRFAIKIMCTHNASAAETTSCSAKHAPNPSEETQ 393

>Y177_TREPA (O83207) Hypothetical protein TP0177|
          Length = 436

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 12/40 (30%)
 Frame = -3

Query: 245 SPSQPYLYRNNTPDICLP-----WEAKH-------EVLFP 162
           S  Q  LYRN +PDIC+      W A+H        VLFP
Sbjct: 154 SALQALLYRNISPDICMSTDGSFWAAEHFPPAPTLPVLFP 193

>YRAI_BACSU (O07909) Hypothetical protein yraI|
          Length = 144

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 188 PRASKYPAYCYGTGTVVT 241
           P  ++ P YCY TGT VT
Sbjct: 82  PSGTRIPIYCYKTGTTVT 99

>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 GPPPLRRTQGKAPRVWPPRASKYPAY 214
           GPPP R   G AP+  PPRA+  P++
Sbjct: 215 GPPPSR---GPAPQKTPPRAAPPPSF 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,718,528
Number of Sequences: 219361
Number of extensions: 966322
Number of successful extensions: 2534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2532
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)