Clone Name | rbastl13a09 |
---|---|
Clone Library Name | barley_pub |
>emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, complete sequence Length = 36302 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tttccttttctctttttctg 220 |||||||||||||||||||| Sbjct: 35437 tttccttttctctttttctg 35418
>emb|AL139241.11| Human DNA sequence from clone RP11-34A14 on chromosome 10 Contains the 3' end of gene FLJ37160, the LOXL4 gene for lysyl oxidase-like 4, a novel gene and a CpG island, complete sequence Length = 188192 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tttccttttctctttttctg 220 |||||||||||||||||||| Sbjct: 19096 tttccttttctctttttctg 19077
>emb|AL049176.3|HS141H5 Human DNA sequence from clone RP6-141H5 on chromosome Xq22.1-23 Contains the 3' end of the gene for a likely ortholog of mouse neuralin 1 (NRLN1), complete sequence Length = 121600 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tgtcttgccacaggtttcct 206 |||||||||||||||||||| Sbjct: 42276 tgtcttgccacaggtttcct 42257
>emb|AL035461.11|HS967N21 Human DNA sequence from clone RP5-967N21 on chromosome 20p12.3-13 Contains the CHGB gene for chromogranin B (secretogranin 1), a novel pseudogene, the gene for CGI-09 protein (CGI-09), the C20orf154 gene for a novel MCM2/3/5 family member, a pseudogene similar to part of cytochrome c oxidase I, the C20orf155 gene for a novel CDP-alcohol phosphatidyltransferase family member, the 3' end of a novel gene and four CpG islands, complete sequence Length = 139352 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aggtttccttttctcttttt 217 |||||||||||||||||||| Sbjct: 102619 aggtttccttttctcttttt 102600
>gb|AC011355.6| Homo sapiens chromosome 5 clone CTC-354H18, complete sequence Length = 114276 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtttccttttctctttttct 219 |||||||||||||||||||| Sbjct: 52890 gtttccttttctctttttct 52871
>gb|AC096949.2| Homo sapiens chromosome 1 clone RP4-581O6, complete sequence Length = 106449 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tttccttttctctttttctg 220 |||||||||||||||||||| Sbjct: 94582 tttccttttctctttttctg 94563
>gb|AC126425.2| Lemur catta, clone -162D1, complete sequence Length = 154718 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tttccttttctctttttctg 220 |||||||||||||||||||| Sbjct: 27273 tttccttttctctttttctg 27254
>gb|AC131599.2| Lemur catta, clone -206F2, complete sequence Length = 155606 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tttccttttctctttttctg 220 |||||||||||||||||||| Sbjct: 90464 tttccttttctctttttctg 90483
>gb|AC093901.2| Homo sapiens BAC clone RP11-730J4 from 2, complete sequence Length = 161153 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttccttttctctttttctgc 221 |||||||||||||||||||| Sbjct: 144694 ttccttttctctttttctgc 144675
>gb|AC102491.19| Mus musculus chromosome 1, clone RP24-529L13, complete sequence Length = 190728 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtttccttttctctttttct 219 |||||||||||||||||||| Sbjct: 22737 gtttccttttctctttttct 22718
>dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complete sequence Length = 150613 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tttctctttttctgccgatt 226 |||||||||||||||||||| Sbjct: 74780 tttctctttttctgccgatt 74761
>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19, complete sequence Length = 191582 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atgtaatataatcttaataa 23 |||||||||||||||||||| Sbjct: 165949 atgtaatataatcttaataa 165930
>dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-428C14, complete sequence Length = 166893 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 caggtttccttttctctttt 216 |||||||||||||||||||| Sbjct: 74125 caggtttccttttctctttt 74144
>dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-956A8, complete sequence Length = 114109 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tttagagctaagcaaactga 273 |||||||||||||||||||| Sbjct: 94632 tttagagctaagcaaactga 94651
>dbj|AP001929.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640N11, complete sequence Length = 161547 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tttagagctaagcaaactga 273 |||||||||||||||||||| Sbjct: 31460 tttagagctaagcaaactga 31479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,315,837 Number of Sequences: 3902068 Number of extensions: 2315837 Number of successful extensions: 59758 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59735 Number of HSP's gapped (non-prelim): 23 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)