ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, comple... 40 3.7
2emb|AL139241.11| Human DNA sequence from clone RP11-34A14 on chr... 40 3.7
3emb|AL049176.3|HS141H5 Human DNA sequence from clone RP6-141H5 o... 40 3.7
4emb|AL035461.11|HS967N21 Human DNA sequence from clone RP5-967N2... 40 3.7
5gb|AC011355.6| Homo sapiens chromosome 5 clone CTC-354H18, compl... 40 3.7
6gb|AC096949.2| Homo sapiens chromosome 1 clone RP4-581O6, comple... 40 3.7
7gb|AC126425.2| Lemur catta, clone -162D1, complete sequence 40 3.7
8gb|AC131599.2| Lemur catta, clone -206F2, complete sequence 40 3.7
9gb|AC093901.2| Homo sapiens BAC clone RP11-730J4 from 2, complet... 40 3.7
10gb|AC102491.19| Mus musculus chromosome 1, clone RP24-529L13, co... 40 3.7
11dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complet... 40 3.7
12emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 i... 40 3.7
13dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.7
14dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.7
15dbj|AP001929.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.7

>emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, complete sequence
          Length = 36302

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tttccttttctctttttctg 220
             ||||||||||||||||||||
Sbjct: 35437 tttccttttctctttttctg 35418



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>emb|AL139241.11| Human DNA sequence from clone RP11-34A14 on chromosome 10 Contains the
             3' end of gene FLJ37160, the LOXL4 gene for lysyl
             oxidase-like 4, a novel gene and a CpG island, complete
             sequence
          Length = 188192

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tttccttttctctttttctg 220
             ||||||||||||||||||||
Sbjct: 19096 tttccttttctctttttctg 19077



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>emb|AL049176.3|HS141H5 Human DNA sequence from clone RP6-141H5 on chromosome Xq22.1-23
             Contains the 3' end of the gene for a likely ortholog of
             mouse neuralin 1 (NRLN1), complete sequence
          Length = 121600

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tgtcttgccacaggtttcct 206
             ||||||||||||||||||||
Sbjct: 42276 tgtcttgccacaggtttcct 42257



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>emb|AL035461.11|HS967N21 Human DNA sequence from clone RP5-967N21 on chromosome 20p12.3-13
              Contains the CHGB gene for chromogranin B (secretogranin
              1), a novel pseudogene, the gene for CGI-09 protein
              (CGI-09), the C20orf154 gene for a novel MCM2/3/5 family
              member, a pseudogene similar to part of cytochrome c
              oxidase I, the C20orf155 gene for a novel CDP-alcohol
              phosphatidyltransferase family member, the 3' end of a
              novel gene and four CpG islands, complete sequence
          Length = 139352

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    aggtttccttttctcttttt 217
              ||||||||||||||||||||
Sbjct: 102619 aggtttccttttctcttttt 102600



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>gb|AC011355.6| Homo sapiens chromosome 5 clone CTC-354H18, complete sequence
          Length = 114276

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   gtttccttttctctttttct 219
             ||||||||||||||||||||
Sbjct: 52890 gtttccttttctctttttct 52871



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>gb|AC096949.2| Homo sapiens chromosome 1 clone RP4-581O6, complete sequence
          Length = 106449

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tttccttttctctttttctg 220
             ||||||||||||||||||||
Sbjct: 94582 tttccttttctctttttctg 94563



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>gb|AC126425.2| Lemur catta, clone -162D1, complete sequence
          Length = 154718

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tttccttttctctttttctg 220
             ||||||||||||||||||||
Sbjct: 27273 tttccttttctctttttctg 27254



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>gb|AC131599.2| Lemur catta, clone -206F2, complete sequence
          Length = 155606

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   tttccttttctctttttctg 220
             ||||||||||||||||||||
Sbjct: 90464 tttccttttctctttttctg 90483



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>gb|AC093901.2| Homo sapiens BAC clone RP11-730J4 from 2, complete sequence
          Length = 161153

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    ttccttttctctttttctgc 221
              ||||||||||||||||||||
Sbjct: 144694 ttccttttctctttttctgc 144675



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>gb|AC102491.19| Mus musculus chromosome 1, clone RP24-529L13, complete sequence
          Length = 190728

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   gtttccttttctctttttct 219
             ||||||||||||||||||||
Sbjct: 22737 gtttccttttctctttttct 22718



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>dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complete sequence
          Length = 150613

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   tttctctttttctgccgatt 226
             ||||||||||||||||||||
Sbjct: 74780 tttctctttttctgccgatt 74761



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>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
              complete sequence
          Length = 191582

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      atgtaatataatcttaataa 23
              ||||||||||||||||||||
Sbjct: 165949 atgtaatataatcttaataa 165930



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>dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-428C14, complete
             sequence
          Length = 166893

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   caggtttccttttctctttt 216
             ||||||||||||||||||||
Sbjct: 74125 caggtttccttttctctttt 74144



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>dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-956A8, complete
             sequence
          Length = 114109

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tttagagctaagcaaactga 273
             ||||||||||||||||||||
Sbjct: 94632 tttagagctaagcaaactga 94651



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>dbj|AP001929.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640N11, complete
             sequence
          Length = 161547

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tttagagctaagcaaactga 273
             ||||||||||||||||||||
Sbjct: 31460 tttagagctaagcaaactga 31479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,315,837
Number of Sequences: 3902068
Number of extensions: 2315837
Number of successful extensions: 59758
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59735
Number of HSP's gapped (non-prelim): 23
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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