ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13a08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence Length = 206284 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Plus Query: 120 aagaatggggaggaagagaaggagaata 147 ||||| |||||||||||||||||||||| Sbjct: 74107 aagaagggggaggaagagaaggagaata 74134
>gb|AC182436.1| Mus musculus chromosome 5, clone wi1-1982K15, complete sequence Length = 43869 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 120 aagaatggggaggaagagaaggagaa 145 ||||| |||||||||||||||||||| Sbjct: 29736 aagaagggggaggaagagaaggagaa 29761
>gb|AC165966.3| Mus musculus BAC clone RP23-259L2 from chromosome 17, complete sequence Length = 194944 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 gaatggggaggaagagaaggag 143 |||||||||||||||||||||| Sbjct: 68991 gaatggggaggaagagaaggag 68970
>gb|AC102518.11| Mus musculus chromosome 8, clone RP24-502J8, complete sequence Length = 199824 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 120 aagaatggggaggaagagaaggagaa 145 ||||| |||||||||||||||||||| Sbjct: 39396 aagaagggggaggaagagaaggagaa 39421
>ref|XM_951656.1| Neurospora crassa OR74A hypothetical protein (NCU01472.1) partial mRNA Length = 4494 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 gataagaatggggaggaagag 137 ||||||||||||||||||||| Sbjct: 4366 gataagaatggggaggaagag 4386
>ref|XM_327910.1| Neurospora crassa OR74A hypothetical protein (NCU01472.1) partial mRNA Length = 4494 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 gataagaatggggaggaagag 137 ||||||||||||||||||||| Sbjct: 4366 gataagaatggggaggaagag 4386
>gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, complete sequence Length = 203014 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aatggggaggaagagaaggag 143 ||||||||||||||||||||| Sbjct: 145558 aatggggaggaagagaaggag 145578
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gtcacagagagatccattaca 101 ||||||||||||||||||||| Sbjct: 2613128 gtcacagagagatccattaca 2613148
>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5 Length = 191196 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 gataagaatggggaggaagag 137 ||||||||||||||||||||| Sbjct: 42154 gataagaatggggaggaagag 42174
>emb|AL683829.15| Mouse DNA sequence from clone RP23-64F17 on chromosome 4 Contains two novel genes, the gene for a novel major urinary protein (Mup) family member, the Zfp37 gene for zinc finger protein 37, the Slc31a2 gene for solute carrier family 31 member 2 and two CpG islands, complete sequence Length = 223133 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Minus Query: 121 agaatggggaggaagagaaggagaa 145 |||| |||||||||||||||||||| Sbjct: 145640 agaagggggaggaagagaaggagaa 145616 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 agaatggggaggaagagaaggagaa 145 |||| |||||||||||||||||||| Sbjct: 137615 agaagggggaggaagagaaggagaa 137639
>gb|AC153815.7| Mus musculus 6 BAC RP23-205F19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230983 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gagataagaatggggaggaagagaa 139 |||||||| |||||||||||||||| Sbjct: 152766 gagataaggatggggaggaagagaa 152790
>dbj|BS000645.2| Pan troglodytes chromosome Y clone: PTB-520M19, complete sequence Length = 166301 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 aatggggaggaagagaaggag 143 ||||||||||||||||||||| Sbjct: 11245 aatggggaggaagagaaggag 11225
>dbj|BS000539.1| Pan troglodytes chromosome Y clone:PTB-144M03, complete sequences Length = 21701 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aatggggaggaagagaaggag 143 ||||||||||||||||||||| Sbjct: 21399 aatggggaggaagagaaggag 21419
>dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, complete sequences Length = 198405 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aatggggaggaagagaaggag 143 ||||||||||||||||||||| Sbjct: 134875 aatggggaggaagagaaggag 134895
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aatggggaggaagagaaggag 143 ||||||||||||||||||||| Sbjct: 19421147 aatggggaggaagagaaggag 19421167
>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence Length = 162298 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaatggggaggaagagaagg 141 ||||||||||||||||||||| Sbjct: 42415 agaatggggaggaagagaagg 42435
>gb|AC012104.6|AC012104 Mus musculus chromosome , clone CT7-478J15, complete sequence Length = 124373 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gagataagaatggggaggaagagaa 139 |||||||| |||||||||||||||| Sbjct: 41886 gagataaggatggggaggaagagaa 41910
>gb|AC115871.8| Mus musculus chromosome 5, clone RP24-343A12, complete sequence Length = 175928 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 60861 ggggaggaagagaaggagaa 60842
>gb|BC103849.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone MGC:118987 IMAGE:40002762), complete cds Length = 888 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 860 atggggaggaagagaaggag 879
>gb|BC103850.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone MGC:118988 IMAGE:40002763), complete cds Length = 887 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 859 atggggaggaagagaaggag 878
>gb|BC103851.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone MGC:118989 IMAGE:40002765), complete cds Length = 887 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 859 atggggaggaagagaaggag 878
>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence Length = 181572 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tggggaggaagagaaggaga 144 |||||||||||||||||||| Sbjct: 84798 tggggaggaagagaaggaga 84779
>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence Length = 157001 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aatggggaggaagagaagga 142 |||||||||||||||||||| Sbjct: 89209 aatggggaggaagagaagga 89190
>gb|AC163353.3| Mus musculus BAC clone RP23-55G7 from chromosome 6, complete sequence Length = 264135 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 80758 ggggaggaagagaaggagaa 80739
>gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosome 6, complete sequence Length = 169094 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 92001 ggggaggaagagaaggagaa 92020
>ref|NR_002165.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like (HMG4L) on chromosome 20 Length = 888 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 860 atggggaggaagagaaggag 879
>gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, complete sequence Length = 195122 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aatggggaggaagagaagga 142 |||||||||||||||||||| Sbjct: 14274 aatggggaggaagagaagga 14293
>gb|BC059784.1| Mus musculus cDNA clone IMAGE:4951210, partial cds Length = 1517 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 1171 ggggaggaagagaaggagaa 1190
>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence Length = 204911 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 177307 ggggaggaagagaaggagaa 177288
>gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 200439 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 24028 ggggaggaagagaaggagaa 24009
>emb|AL049709.18|HSDJ18C9 Human DNA sequence from clone RP1-18C9 on chromosome 20 Contains the 5' end of the ACAS2 gene for acetyl-Coenzyme A synthetase 2 (ADP forming), the GGTL3 gene for gamma- glutamyltranspeptidase-like 3 protein, the HMG4L pseudogene similar to high mobility group proteins, the 5' end of the AIB3 gene for thyroid hormone receptor binding protein (KIAA0181) and four CpG Islands, complete sequence Length = 126755 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 39706 atggggaggaagagaaggag 39687
>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence Length = 178827 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gaggaagagaaggagaatac 148 |||||||||||||||||||| Sbjct: 163271 gaggaagagaaggagaatac 163290
>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence Length = 255667 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ggaggaagagaaggagaata 147 |||||||||||||||||||| Sbjct: 144843 ggaggaagagaaggagaata 144862
>gb|AC011131.6| Homo sapiens chromosome 8, clone RP11-351E7, complete sequence Length = 178705 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tttggaaacacaatgacatt 24 |||||||||||||||||||| Sbjct: 79267 tttggaaacacaatgacatt 79248
>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence Length = 190779 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aatggggaggaagagaagga 142 |||||||||||||||||||| Sbjct: 63457 aatggggaggaagagaagga 63476
>gb|AC156542.9| Mus musculus chromosome 1, clone RP23-370J16, complete sequence Length = 168193 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 91949 ggggaggaagagaaggagaa 91930
>gb|AC112679.15| Mus musculus chromosome 1, clone RP23-199H14, complete sequence Length = 185805 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 37612 ggggaggaagagaaggagaa 37593
>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence Length = 237678 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 aagaatggggaggaagagaaggag 143 ||||| |||||||||||||||||| Sbjct: 170697 aagaagggggaggaagagaaggag 170720
>gb|AC097173.1| Homo sapiens BAC clone RP11-96A1 from 4, complete sequence Length = 175629 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agaatggggaggaagagaaggaga 144 ||||||||||||||| |||||||| Sbjct: 97766 agaatggggaggaagggaaggaga 97743
>gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, complete sequence Length = 155143 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aatggggaggaagagaagga 142 |||||||||||||||||||| Sbjct: 155033 aatggggaggaagagaagga 155014
>emb|AJ343967.1|HEC343967 Hepatitis C virus partial mRNA for envelope protein (E2 gene), isolate ETR7 Length = 387 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ggaggaagagaaggagaata 147 |||||||||||||||||||| Sbjct: 322 ggaggaagagaaggagaata 303
>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence Length = 155730 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ggaggaagagaaggagaata 147 |||||||||||||||||||| Sbjct: 26051 ggaggaagagaaggagaata 26032
>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence Length = 209834 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tggggaggaagagaaggaga 144 |||||||||||||||||||| Sbjct: 124602 tggggaggaagagaaggaga 124583
>gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome 9, complete sequence Length = 164119 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gaggaagagaaggagaatac 148 |||||||||||||||||||| Sbjct: 11147 gaggaagagaaggagaatac 11166
>gb|AC125143.4| Mus musculus BAC clone RP24-342H13 from 17, complete sequence Length = 219259 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 144608 atggggaggaagagaaggag 144589
>gb|AC132228.3| Mus musculus BAC clone RP24-480G11 from 6, complete sequence Length = 180203 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggggaggaagagaaggagaa 145 |||||||||||||||||||| Sbjct: 59657 ggggaggaagagaaggagaa 59638
>gb|AC168090.3| Mus musculus BAC clone RP24-272N5 from chromosome 17, complete sequence Length = 157940 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 29571 atggggaggaagagaaggag 29552
>emb|AL772235.4| Mouse DNA sequence from clone RP23-155K12 on chromosome 2, complete sequence Length = 190410 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tggggaggaagagaaggaga 144 |||||||||||||||||||| Sbjct: 160022 tggggaggaagagaaggaga 160003
>emb|AL606919.12| Mouse DNA sequence from clone RP23-264F10 on chromosome 4, complete sequence Length = 187816 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atggggaggaagagaaggag 143 |||||||||||||||||||| Sbjct: 60268 atggggaggaagagaaggag 60249 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,398,372 Number of Sequences: 3902068 Number of extensions: 2398372 Number of successful extensions: 237600 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 237312 Number of HSP's gapped (non-prelim): 288 length of query: 216 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 194 effective length of database: 17,147,199,772 effective search space: 3326556755768 effective search space used: 3326556755768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
