ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13a07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z49145.1|HVPAL2MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1670 bp) Length = 1670 Score = 456 bits (230), Expect = e-125 Identities = 256/267 (95%) Strand = Plus / Minus Query: 27 tttatcatgaaaacttatcacacagtacccttttaacttacatcataaaagttctactgg 86 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1658 tttatcatgaaaacttatcacacagtacccttttaacttacatcataaaagatctactgg 1599 Query: 87 ctacccaacactaccaggtcatgcaattgcaatctttagcaatgcactggaagctctgga 146 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1598 ctacccaacactaccaggtcatgcaattgcaacctttagcaatgcactggaagctctgga 1539 Query: 147 agaacgtcgcaaacatcaacttggagagattacaacnnnnnnncagtatcatcactggag 206 ||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 1538 agaacgtcgcaaacatcaacttgtagagattacaacaaaaaaatagtatcatcactggag 1479 Query: 207 ccttctgaaatttgaagcacgctactcttccatttctggatcctctgttcagcagatagg 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1478 ccttctgaaatttgaagcacgctactcttccatttctggatcctctgttcagcagatagg 1419 Query: 267 caggggctcaccattccactccttcag 293 ||||||||||||||||||||||||||| Sbjct: 1418 caggggctcaccattccactccttcag 1392
>emb|X99705.1|TAPALGEN1 T.aestivum PAL gene Length = 3444 Score = 268 bits (135), Expect = 9e-69 Identities = 258/297 (86%), Gaps = 7/297 (2%) Strand = Plus / Minus Query: 1 gagttttactttctggaaccagtatatttatcatgaaaacttatcacaca--gtaccctt 58 |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| Sbjct: 3368 gagttttactttcttgaaccggtatatttatcatggaaacttatcacacactgtaccctt 3309 Query: 59 tta--acttaca-tcataaaagttctactggctacccaacactaccaggtcatgcaattg 115 ||| ||||||| ||| | ||||| ||||| |||||||||||| ||| |||||||||||| Sbjct: 3308 ttataacttacaatcaaagaagttttactgtctacccaacactgccatgtcatgcaattg 3249 Query: 116 caatctttagcaatgcactggaag--ctctggaagaacgtcgcaaacatcaacttggaga 173 |||||||| |||||||| |||||| |||||||||||||| |||||||||||||| ||| Sbjct: 3248 caatctttggcaatgcattggaagctctctggaagaacgttgcaaacatcaacttttaga 3189 Query: 174 gattacaacnnnnnnncagtatcatcactggagccttctgaaatttgaagcacgctactc 233 ||||||| |||||||| ||||| || |||||||||| ||||||||||||||| Sbjct: 3188 aattacaatgaaaaaacagtatcagcactgcaggcttctgaaatctgaagcacgctactc 3129 Query: 234 ttccatttctggatcctctgttcagcagataggcaggggctcaccattccactcctt 290 |||||||||| ||| |||||||||||||| |||||||||||| || ||||||||||| Sbjct: 3128 ttccatttcttgatgctctgttcagcagagaggcaggggctcgccgttccactcctt 3072
>gb|L11883.1|WHTWALI4A Triticum aestivum phenylalanine ammonia-lyase (wali4) mRNA, 3' end, partial cds Length = 634 Score = 246 bits (124), Expect = 3e-62 Identities = 247/287 (86%), Gaps = 10/287 (3%) Strand = Plus / Minus Query: 8 actttctggaaccagtatatttatcatgaaaacttatcacaca--gtaccctttta--ac 63 ||||||| ||||||||||||||| |||| |||||||||||||| ||||||||||| || Sbjct: 634 actttcttgaaccagtatatttaccatggaaacttatcacacactgtacccttttataac 575 Query: 64 ttacatcataaaagttctactggctacccaacactaccaggtcatgcaattgcaatcttt 123 |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct: 574 ttacatcaacaaagttctaccggctacccaacactaccaagtcatgcaattgcaatcttt 515 Query: 124 agcaatgcactggaagctctggaagaacgtcgcaaacatcaacttggagagattacaacn 183 ||| |||||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct: 514 -----ggcattggaagctctggaagaacgttgcaaacatcaacttttagaaattacaatg 460 Query: 184 nnnnnncagtatcatcactggagccttctgaaatttgaagcacgctactcttccatttct 243 |||||| ||||||||||||||||||||| ||||||| || |||||||||| || Sbjct: 459 aaaaaacagtataatcactggagccttctgaaatctgaagca-actgctcttccattcct 401 Query: 244 ggatcctctgttcagcagataggcaggggctcaccattccactcctt 290 |||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 400 ggatcctctgttcaacagataggtaggggctcgccgttccactcctt 354
>emb|X99725.1|TAPALGEN2 T.aestivum PAL gene, coding region Length = 1419 Score = 101 bits (51), Expect = 1e-18 Identities = 94/108 (87%), Gaps = 4/108 (3%) Strand = Plus / Minus Query: 14 tggaaccagtatatttatcatgaaaacttatcacacagtacccttttaacttacat---- 69 |||| |||||| |||||||||| ||| ||| |||||| || | ||||||||||| | Sbjct: 1260 tggagccagtagatttatcatgtaaatttaacacacactaactttttaacttacgtacac 1201 Query: 70 cataaaagttctactggctacccaacactaccaggtcatgcaattgca 117 ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1200 cataaaagttctactggctacccaacactaccaagtcatgcaattgca 1153 Score = 85.7 bits (43), Expect = 7e-14 Identities = 76/87 (87%) Strand = Plus / Minus Query: 204 gagccttctgaaatttgaagcacgctactcttccatttctggatcctctgttcagcagat 263 |||||||| ||||| |||||||| ||||||||| ||||| |||||||| || |||||| Sbjct: 1072 gagccttcagaaatctgaagcacactactcttcactttctcgatcctctatttagcagag 1013 Query: 264 aggcaggggctcaccattccactcctt 290 |||||||||||| || ||||||||||| Sbjct: 1012 aggcaggggctcgccgttccactcctt 986
>emb|X99483.1|HVPAL6 H.vulgare mRNA for phenylalanine ammonia-lyase, pal6 Length = 1251 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 252 tgttcagcagataggcaggggctcaccattccactcctt 290 |||| ||||||||||||| ||||| |||||||||||||| Sbjct: 1059 tgtttagcagataggcagaggctcgccattccactcctt 1021
>emb|X99482.1|HVPAL4 H.vulgare mRNA for phenylalanine ammonia-lyase, pal4 Length = 1344 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 54 cccttttaacttacatcataaaagttctactggctacccaacactaccaggtcatgcaat 113 |||||||||| |||||| || | |||||||||||||| | |||||||| |||||||| Sbjct: 1277 cccttttaacctacatcgtagagattctactggctacctaccactaccaaagcatgcaat 1218 Query: 114 tgcaatctttagcaa 128 |||||| ||| |||| Sbjct: 1217 tgcaatttttggcaa 1203 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 agcagataggcaggggctcacc 278 |||||||||||||||||||||| Sbjct: 1057 agcagataggcaggggctcacc 1036
>ref|XM_466849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2407 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 253 gttcagcagataggcaggggctcaccattccactcctt 290 ||||||||||| ||||||||||| || ||||||||||| Sbjct: 2179 gttcagcagattggcaggggctcgccgttccactcctt 2142
>emb|X87946.1|OSDNAZB8 O.sativa ZB8 gene Length = 4660 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 253 gttcagcagataggcaggggctcaccattccactcctt 290 ||||||||||| ||||||||||| || ||||||||||| Sbjct: 4578 gttcagcagattggcaggggctcgccgttccactcctt 4541
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 253 gttcagcagataggcaggggctcaccattccactcctt 290 ||||||||||| ||||||||||| || ||||||||||| Sbjct: 25025216 gttcagcagattggcaggggctcgccgttccactcctt 25025253
>dbj|AP005000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0042D01 Length = 148305 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 253 gttcagcagataggcaggggctcaccattccactcctt 290 ||||||||||| ||||||||||| || ||||||||||| Sbjct: 38204 gttcagcagattggcaggggctcgccgttccactcctt 38241
>dbj|AK068993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A06, full insert sequence Length = 2406 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 253 gttcagcagataggcaggggctcaccattccactcctt 290 ||||||||||| ||||||||||| || ||||||||||| Sbjct: 2178 gttcagcagattggcaggggctcgccgttccactcctt 2141
>ref|XM_473192.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2124 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||||||||| || ||||||||||| Sbjct: 2124 tcagcagatgggcaggggctcgccgttccactcctt 2089
>gb|AY224546.1| Oryza sativa (japonica cultivar-group) isolate 24080 phenylalanine ammonia-lyase mRNA, complete cds Length = 2016 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||||||||| || ||||||||||| Sbjct: 2016 tcagcagatgggcaggggctcgccgttccactcctt 1981
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||||||||| || ||||||||||| Sbjct: 98026 tcagcagatgggcaggggctcgccgttccactcctt 98061 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 118212 tcagcagatgggcagaggctcgccgttccactcctt 118247
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||||||||| || ||||||||||| Sbjct: 25880616 tcagcagatgggcaggggctcgccgttccactcctt 25880651 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 25900802 tcagcagatgggcagaggctcgccgttccactcctt 25900837
>dbj|AK100346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082J11, full insert sequence Length = 2510 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||||||||| || ||||||||||| Sbjct: 2216 tcagcagatgggcaggggctcgccgttccactcctt 2181
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence Length = 139226 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||||||||| || ||||||||||| Sbjct: 6878 tcagcagatgggcaggggctcgccgttccactcctt 6913 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 27064 tcagcagatgggcagaggctcgccgttccactcctt 27099
>gb|AF237954.1|AF237954 Rubus idaeus phenylalanine ammonia-lyase 1 (PAL1) mRNA, complete cds Length = 2501 Score = 46.1 bits (23), Expect = 0.062 Identities = 29/31 (93%) Strand = Plus / Minus Query: 262 ataggcaggggctcaccattccactccttca 292 ||||||||||| |||||||||||||||||| Sbjct: 2251 ataggcaggggagcaccattccactccttca 2221
>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete sequence Length = 183478 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ctcaccattccactccttcag 293 ||||||||||||||||||||| Sbjct: 86984 ctcaccattccactccttcag 86964
>gb|AC122378.4| Mus musculus BAC clone RP23-474C9 from chromosome 15, complete sequence Length = 203662 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 20 cagtatatttatcatgaaaacttat 44 |||||||||||||||||||| |||| Sbjct: 123273 cagtatatttatcatgaaaatttat 123297
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tcgcaaacatcaacttggaga 173 ||||||||||||||||||||| Sbjct: 510262 tcgcaaacatcaacttggaga 510242
>gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, complete sequence Length = 198279 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 ttttactttctggaaccagtatatt 28 ||||||||||||||||||| ||||| Sbjct: 141931 ttttactttctggaaccaggatatt 141907
>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204318 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctcaccattccactccttcag 293 ||||||||||||||||||||| Sbjct: 13154 ctcaccattccactccttcag 13174
>ref|XM_522645.1| PREDICTED: Pan troglodytes LOC467247 (LOC467247), mRNA Length = 1545 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcatcactggagccttctga 214 |||||||||||||||||||| Sbjct: 210 tcatcactggagccttctga 229
>ref|XM_473196.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2145 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 2145 tcagcagatgggcagaggctcgccgttccactcctt 2110
>gb|AE008446.1| Streptococcus pneumoniae R6 section 62 of 184 of the complete genome Length = 11482 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctactcttccatttctggat 247 |||||||||||||||||||| Sbjct: 723 ctactcttccatttctggat 704
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 tccatttctggatcctctgttcag 258 ||||||||||| |||||||||||| Sbjct: 48030 tccatttctgggtcctctgttcag 48007
>gb|AC147175.2| Xenopus tropicalis clone CH216-54E8, complete sequence Length = 187921 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aattgcaatctttagcaatg 130 |||||||||||||||||||| Sbjct: 43842 aattgcaatctttagcaatg 43823
>gb|AY450643.1| Bambusa oldhamii phenylalanine ammonia-lyase (PAL1) mRNA, complete cds Length = 2139 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 2139 tcagcagatgggcagtggctcgccgttccactcctt 2104
>ref|XM_723578.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01095) partial mRNA Length = 2052 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cttttaacttacatcataaa 75 |||||||||||||||||||| Sbjct: 1357 cttttaacttacatcataaa 1376
>ref|XM_674857.1| Plasmodium berghei strain ANKA hypothetical protein (PB103275.00.0) partial mRNA Length = 1818 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cttttaacttacatcataaa 75 |||||||||||||||||||| Sbjct: 1363 cttttaacttacatcataaa 1382
>gb|AC096070.7| Rattus norvegicus 4 BAC CH230-20J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 231332 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 atgaaaacttatcacacagt 52 |||||||||||||||||||| Sbjct: 193834 atgaaaacttatcacacagt 193815
>gb|AC121515.3| Rattus norvegicus strain Brown Norway clone RP31-425H6, complete sequence Length = 152757 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atgaaaacttatcacacagt 52 |||||||||||||||||||| Sbjct: 118563 atgaaaacttatcacacagt 118582
>gb|AC011328.11| Homo sapiens chromosome 10 clone RP11-295O23, complete sequence Length = 216031 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 atcacacagtacccttttaa 62 |||||||||||||||||||| Sbjct: 90998 atcacacagtacccttttaa 90979
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 16320134 tcagcagatgggcagaggctcgccgttccactcctt 16320169
>gb|AF326116.1|AF326116 Agastache rugosa phenylalanine ammonia-lyase (PAL) mRNA, complete cds Length = 2448 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 257 agcagataggcaggggctcaccattcca 284 ||||||||||||| || ||||||||||| Sbjct: 2243 agcagataggcagaggttcaccattcca 2216
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atgaaaacttatcacacagt 52 |||||||||||||||||||| Sbjct: 454584 atgaaaacttatcacacagt 454603
>gb|AY005474.1| Triticum aestivum inducible phenylalanine ammonia-lyase mRNA, partial cds Length = 1933 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 |||||||| ||||||||||| || ||||||||||| Sbjct: 1635 tcagcagagcggcaggggctcgccgttccactcctt 1600
>dbj|AK067801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118I15, full insert sequence Length = 2551 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 2270 tcagcagatgggcagaggctcgccgttccactcctt 2235
>emb|BX005280.14| Zebrafish DNA sequence from clone CH211-256J23 in linkage group 18, complete sequence Length = 164570 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agtacccttttaacttacat 69 |||||||||||||||||||| Sbjct: 69378 agtacccttttaacttacat 69397
>emb|AJ810175.1| Beta vulgaris pal gene for phenylalanine ammonia lyase, exons 1-2 Length = 13672 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 259 cagataggcaggggctcaccattccactcctt 290 ||||||||||| || |||||||||||||||| Sbjct: 11838 cagataggcagaggagcaccattccactcctt 11807
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 16273367 tcagcagatgggcagaggctcgccgttccactcctt 16273402
>emb|AL732380.4|CNS08C93 Oryza sativa chromosome 12, . BAC OSJNBb0119N22 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79613 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 tcagcagataggcaggggctcaccattccactcctt 290 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 67185 tcagcagatgggcagaggctcgccgttccactcctt 67220
>emb|AL732559.9| Mouse DNA sequence from clone RP23-9A5 on chromosome 2, complete sequence Length = 167364 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tatcatgaaaacttatcaca 48 |||||||||||||||||||| Sbjct: 22860 tatcatgaaaacttatcaca 22879 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,769,447 Number of Sequences: 3902068 Number of extensions: 2769447 Number of successful extensions: 48130 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47986 Number of HSP's gapped (non-prelim): 139 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
