ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 176 3e-41
2gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 176 3e-41
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 176 3e-41
4dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
5gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 111 1e-21
6gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 46 0.070
7emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chr... 46 0.070
8gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, comp... 46 0.070
9gb|AC162311.7| Mus musculus 6 BAC RP23-81K19 (Roswell Park Cance... 42 1.1
10gb|AF163865.1|AF163865 Mus musculus alpha-synuclein (Snca) gene,... 42 1.1
11gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Can... 42 1.1
12gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete... 42 1.1
13gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, co... 42 1.1
14ref|XM_464737.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
15gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete... 40 4.3
16gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467... 40 4.3
17emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chrom... 40 4.3
18gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 40 4.3
19gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosom... 40 4.3
20gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygen... 40 4.3
21ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA 40 4.3
22gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, co... 40 4.3
23gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, c... 40 4.3
24gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 4.3
25gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, com... 40 4.3
26gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 4.3
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
28gb|AC129883.3| Ornithorhynchus anatinus clone OA_Bb-305F19, comp... 40 4.3
29dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
30dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
31emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 40 4.3
32gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 40 4.3
33gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, compl... 40 4.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  176 bits (89), Expect = 3e-41
 Identities = 241/290 (83%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                            
Query: 38       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 97
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10412390 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10412331

                                                                            
Query: 98       ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 155
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10412330 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10412271

                                                                            
Query: 156      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 215
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10412270 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10412211

                                                                            
Query: 216      gggattttctttcagtctgcaagaggctgaccactctgtggtggtggatcttgtatcatc 275
                |  | |   |||||||||||||||||||||| |||||||  | || ||| |||| || ||
Sbjct: 10412210 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10412154

                                                                  
Query: 276      ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaagg 325
                |||||| || || || ||||| || || ||||||||||||||||||||||
Sbjct: 10412153 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaagg 10412104
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  176 bits (89), Expect = 3e-41
 Identities = 241/290 (83%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                         
Query: 38    gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 97
             |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 68943 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 68884

                                                                         
Query: 98    ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 155
             | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 68883 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 68824

                                                                         
Query: 156   tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 215
             ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 68823 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 68764

                                                                         
Query: 216   gggattttctttcagtctgcaagaggctgaccactctgtggtggtggatcttgtatcatc 275
             |  | |   |||||||||||||||||||||| |||||||  | || ||| |||| || ||
Sbjct: 68763 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 68707

                                                               
Query: 276   ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaagg 325
             |||||| || || || ||||| || || ||||||||||||||||||||||
Sbjct: 68706 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaagg 68657
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  176 bits (89), Expect = 3e-41
 Identities = 241/290 (83%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                            
Query: 38       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 97
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10410491 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10410432

                                                                            
Query: 98       ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 155
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10410431 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10410372

                                                                            
Query: 156      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 215
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10410371 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10410312

                                                                            
Query: 216      gggattttctttcagtctgcaagaggctgaccactctgtggtggtggatcttgtatcatc 275
                |  | |   |||||||||||||||||||||| |||||||  | || ||| |||| || ||
Sbjct: 10410311 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10410255

                                                                  
Query: 276      ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaagg 325
                |||||| || || || ||||| || || ||||||||||||||||||||||
Sbjct: 10410254 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaagg 10410205
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>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score =  176 bits (89), Expect = 3e-41
 Identities = 241/290 (83%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                        
Query: 38   gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 97
            |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1603 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 1544

                                                                        
Query: 98   ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 155
            | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 1543 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 1484

                                                                        
Query: 156  tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 215
            ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 1483 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 1424

                                                                        
Query: 216  gggattttctttcagtctgcaagaggctgaccactctgtggtggtggatcttgtatcatc 275
            |  | |   |||||||||||||||||||||| |||||||  | || ||| |||| || ||
Sbjct: 1423 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 1367

                                                              
Query: 276  ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaagg 325
            |||||| || || || ||||| || || ||||||||||||||||||||||
Sbjct: 1366 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaagg 1317
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score =  111 bits (56), Expect = 1e-21
 Identities = 145/174 (83%), Gaps = 3/174 (1%)
 Strand = Plus / Minus

                                                                          
Query: 152    tatatacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaag 211
              ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||
Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681

                                                                          
Query: 212    agctgggattttctttcagtctgcaagaggctgaccactctgtggtggtggatcttgtat 271
              | | |  | |||   |||||||||||||||||||| |||||||  | || ||| |||| |
Sbjct: 125680 aaccgaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgt 125624

                                                                    
Query: 272    catcggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaagg 325
              | |||||||| || || || ||||| || || ||||||||||||||||||||||
Sbjct: 125623 cgtcggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaagg 125570
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>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 147    aactctatatacagactgaaaaa 169
              |||||||||||||||||||||||
Sbjct: 155387 aactctatatacagactgaaaaa 155409
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>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 200   gaagaaactaagagctgggattt 222
             |||||||||||||||||||||||
Sbjct: 20220 gaagaaactaagagctgggattt 20242
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>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 147   aactctatatacagactgaaaaa 169
             |||||||||||||||||||||||
Sbjct: 25345 aactctatatacagactgaaaaa 25323
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>gb|AC162311.7| Mus musculus 6 BAC RP23-81K19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 266441

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 226    ttcagtctgcaagaggctgaccact 250
              |||||||||||| ||||||||||||
Sbjct: 126738 ttcagtctgcaacaggctgaccact 126762
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>gb|AF163865.1|AF163865 Mus musculus alpha-synuclein (Snca) gene, complete cds
          Length = 118777

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 226   ttcagtctgcaagaggctgaccact 250
             |||||||||||| ||||||||||||
Sbjct: 67338 ttcagtctgcaacaggctgaccact 67314
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>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155898

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     ccagatacaaatgaatttagg 102
              |||||||||||||||||||||
Sbjct: 132468 ccagatacaaatgaatttagg 132448
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>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    acaaatgaatttaggaatgaa 108
             |||||||||||||||||||||
Sbjct: 53216 acaaatgaatttaggaatgaa 53236
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>gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, complete sequence
          Length = 184220

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 231   tctgcaagaggctgaccactctgtg 255
             ||||||||||| |||||||||||||
Sbjct: 17989 tctgcaagaggatgaccactctgtg 17965
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>ref|XM_464737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 gtagtggcggtcgcagtagt 302
           ||||||||||||||||||||
Sbjct: 279 gtagtggcggtcgcagtagt 260
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>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    aactctatatacagactgaa 166
              ||||||||||||||||||||
Sbjct: 112238 aactctatatacagactgaa 112219
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>gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467 IMAGE:7043653),
            complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  ccaaaactctcttgccctct 143
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175
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>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete
             sequence
          Length = 210030

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 165   aaaaatagactctggagtctactt 188
             |||||| |||||||||||||||||
Sbjct: 33094 aaaaattgactctggagtctactt 33071
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>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tttctttcagtctgcaagag 240
             ||||||||||||||||||||
Sbjct: 82464 tttctttcagtctgcaagag 82445
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>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 165    aaaaatagactctggagtctactt 188
              |||||| |||||||||||||||||
Sbjct: 199654 aaaaattgactctggagtctactt 199677
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>gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygenase 1 (CCD1) gene,
            complete cds
          Length = 8665

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  tggctcggctcgccggtgaa 323
            ||||||||||||||||||||
Sbjct: 6330 tggctcggctcgccggtgaa 6349
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>ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA
          Length = 1420

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  ccaaaactctcttgccctct 143
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175
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>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence
          Length = 180591

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     acaaatgaatttaggaatga 107
              ||||||||||||||||||||
Sbjct: 143624 acaaatgaatttaggaatga 143605
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>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     acaaatgaatttaggaatga 107
              ||||||||||||||||||||
Sbjct: 138484 acaaatgaatttaggaatga 138465
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>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     acaaatgaatttaggaatga 107
              ||||||||||||||||||||
Sbjct: 152752 acaaatgaatttaggaatga 152771
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>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    acaaatgaatttaggaatga 107
             ||||||||||||||||||||
Sbjct: 16772 acaaatgaatttaggaatga 16791
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    ttattaatagtctgaagaaa 206
              ||||||||||||||||||||
Sbjct: 766718 ttattaatagtctgaagaaa 766737
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 283     gtagtggcggtcgcagtagt 302
               ||||||||||||||||||||
Sbjct: 7024168 gtagtggcggtcgcagtagt 7024149
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>gb|AC129883.3| Ornithorhynchus anatinus clone OA_Bb-305F19, complete sequence
          Length = 181157

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   tctgcaagaggctgaccact 250
             ||||||||||||||||||||
Sbjct: 60288 tctgcaagaggctgaccact 60269
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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   gtagtggcggtcgcagtagt 302
             ||||||||||||||||||||
Sbjct: 27587 gtagtggcggtcgcagtagt 27568
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>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470A03
          Length = 133167

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    gtagtggcggtcgcagtagt 302
              ||||||||||||||||||||
Sbjct: 117790 gtagtggcggtcgcagtagt 117771
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>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
             sequence
          Length = 145652

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tttctttcagtctgcaagag 240
             ||||||||||||||||||||
Sbjct: 46654 tttctttcagtctgcaagag 46635
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>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 168    aatagactctggagtctacttattaata 195
              ||||| |||||||||| |||||||||||
Sbjct: 116693 aatagtctctggagtccacttattaata 116720
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>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence
          Length = 38013

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    acaaatgaatttaggaatga 107
             ||||||||||||||||||||
Sbjct: 12922 acaaatgaatttaggaatga 12941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,420,242
Number of Sequences: 3902068
Number of extensions: 3420242
Number of successful extensions: 66670
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66545
Number of HSP's gapped (non-prelim): 125
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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