ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYR_THEMA (Q9X0H8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 1.7
2GRT1_SCHPO (Q9C469) Zinc finger protein grt1 28 4.8

>SYR_THEMA (Q9X0H8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 546

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 88  HRLTNRLQYIANNYHTCLYKRIVHDPIPPSL 180
           +RLTN LQ +A ++H    K ++ DP  P L
Sbjct: 486 NRLTNYLQSLAESFHAFYTKHVIVDPENPEL 516



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>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 216 VGEEIRTLDWNS*RWWYWI 160
           +GE  +TLD NS R W+WI
Sbjct: 416 IGEYCKTLDINSCREWFWI 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,549,480
Number of Sequences: 219361
Number of extensions: 494166
Number of successful extensions: 1300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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