ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT010431.7| Mouse DNA sequence from clone RP23-453M21 on chr... 44 0.20
2gb|AY530008.1| Tyrannus melancholicus beta-fibrinogen gene, intr... 40 3.1
3emb|AL359194.7| Human DNA sequence from clone RP11-326D19 on chr... 40 3.1
4dbj|AK139740.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 3.1
5dbj|AK083147.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 3.1
6gb|AC091147.15| Homo sapiens chromosome 18, clone RP11-459H24, c... 40 3.1
7gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, compl... 40 3.1

>emb|CT010431.7| Mouse DNA sequence from clone RP23-453M21 on chromosome 13, complete
              sequence
          Length = 204148

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 130    catacttgtttgtataaaagaa 151
              ||||||||||||||||||||||
Sbjct: 136247 catacttgtttgtataaaagaa 136268



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>gb|AY530008.1| Tyrannus melancholicus beta-fibrinogen gene, intron 5 and partial
           cds
          Length = 558

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ccatacttgtttgtataaaa 148
           ||||||||||||||||||||
Sbjct: 110 ccatacttgtttgtataaaa 91



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>emb|AL359194.7| Human DNA sequence from clone RP11-326D19 on chromosome 13, complete
             sequence
          Length = 159919

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   tgtataaaagaattgtacac 159
             ||||||||||||||||||||
Sbjct: 22520 tgtataaaagaattgtacac 22501



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>dbj|AK139740.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020014J18 product:unclassifiable, full insert
           sequence
          Length = 1831

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  attcagatatacacacagac 94
           ||||||||||||||||||||
Sbjct: 703 attcagatatacacacagac 684



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>dbj|AK083147.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630017H24 product:unclassifiable, full
            insert sequence
          Length = 3107

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   attcagatatacacacagac 94
            ||||||||||||||||||||
Sbjct: 2731 attcagatatacacacagac 2750



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>gb|AC091147.15| Homo sapiens chromosome 18, clone RP11-459H24, complete sequence
          Length = 130240

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   taccatacttgtttgtataa 146
             ||||||||||||||||||||
Sbjct: 72270 taccatacttgtttgtataa 72251



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>gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, complete sequence
          Length = 177464

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    attcagatatacacacagac 94
             ||||||||||||||||||||
Sbjct: 86070 attcagatatacacacagac 86051


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,545,947
Number of Sequences: 3902068
Number of extensions: 2545947
Number of successful extensions: 60724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60715
Number of HSP's gapped (non-prelim): 9
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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