Clone Name | rbastl13a02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3145 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848 Query: 217 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatat 266 |||||||||| ||| |||||||||||||||||||| |||| |||||| Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatat 2798
>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence Length = 2519 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266 Query: 217 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatat 266 |||||||||| ||| |||||||||||||||||||| |||| |||||| Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatat 2216
>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full insert sequence Length = 3181 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884 Query: 217 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatat 266 |||||||||| ||| |||||||||||||||||||| |||| |||||| Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatat 2834
>gb|AY105426.1| Zea mays PCO146438 mRNA sequence Length = 3165 Score = 69.9 bits (35), Expect = 4e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 192 ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 251 ||||| ||||| |||||||| || | |||||||||| |||||||||||||||||||||| Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922 Query: 252 ctcgtct 258 || |||| Sbjct: 2921 ctggtct 2915
>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence Length = 2068 Score = 65.9 bits (33), Expect = 6e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 198 gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 257 ||||| |||||||| || | |||||||||| |||||||||||||||||||||||| ||| Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790 Query: 258 t 258 | Sbjct: 1789 t 1789
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 0.87 Identities = 66/81 (81%) Strand = Plus / Plus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 28166340 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 28166399 Query: 217 taatcatctccaactgggcct 237 |||||||||| ||| |||| Sbjct: 28166400 cgatcatctccagctgagcct 28166420 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ccttagcaagagcttgtctcgtctcgtcatat 266 ||||||||||||||||||| |||| |||||| Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatat 28166526
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 42.1 bits (21), Expect = 0.87 Identities = 66/81 (81%) Strand = Plus / Plus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 49813 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 49872 Query: 217 taatcatctccaactgggcct 237 |||||||||| ||| |||| Sbjct: 49873 cgatcatctccagctgagcct 49893 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ccttagcaagagcttgtctcgtctcgtcatat 266 ||||||||||||||||||| |||| |||||| Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatat 49999
>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5, complete sequence Length = 182066 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tggcagaatcaaatttgttt 139 |||||||||||||||||||| Sbjct: 9480 tggcagaatcaaatttgttt 9461
>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 taaatacagcagaatatatt 73 |||||||||||||||||||| Sbjct: 89696 taaatacagcagaatatatt 89677
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccactatagtagcctgttat 42 |||||||||||||||||||| Sbjct: 16754860 ccactatagtagcctgttat 16754841
>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence Length = 156582 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 taaatacagcagaatatatt 73 |||||||||||||||||||| Sbjct: 45601 taaatacagcagaatatatt 45620
>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence Length = 43180 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 53 ctaaatacagcagaatatattcagttaa 80 |||||| |||||||||||||||| |||| Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccactatagtagcctgttat 42 |||||||||||||||||||| Sbjct: 106347 ccactatagtagcctgttat 106328
>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176833 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agacattttcagagagtcca 206 |||||||||||||||||||| Sbjct: 33908 agacattttcagagagtcca 33927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,438,132 Number of Sequences: 3902068 Number of extensions: 2438132 Number of successful extensions: 46035 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45997 Number of HSP's gapped (non-prelim): 38 length of query: 266 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 244 effective length of database: 17,147,199,772 effective search space: 4183916744368 effective search space used: 4183916744368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)