ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA 76 6e-11
2dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
3dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
4gb|AY105426.1| Zea mays PCO146438 mRNA sequence 70 4e-09
5gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence 66 6e-08
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
7dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
8emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 i... 40 3.5
9gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 40 3.5
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
11gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 40 3.5
12gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) gen... 40 3.5
13dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
14emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-3... 40 3.5

>ref|XM_483801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848

                                                              
Query: 217  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatat 266
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||
Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatat 2798



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>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full
            insert sequence
          Length = 2519

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266

                                                              
Query: 217  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatat 266
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||
Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatat 2216



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>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full
            insert sequence
          Length = 3181

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884

                                                              
Query: 217  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatat 266
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||
Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatat 2834



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>gb|AY105426.1| Zea mays PCO146438 mRNA sequence
          Length = 3165

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                        
Query: 192  ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 251
            ||||| ||||| |||||||| || |  |||||||||| ||||||||||||||||||||||
Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922

                   
Query: 252  ctcgtct 258
            || ||||
Sbjct: 2921 ctggtct 2915



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>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence
          Length = 2068

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 257
            ||||| |||||||| || |  |||||||||| |||||||||||||||||||||||| |||
Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790

             
Query: 258  t 258
            |
Sbjct: 1789 t 1789



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                            
Query: 157      aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
                |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 28166340 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 28166399

                                     
Query: 217      taatcatctccaactgggcct 237
                  |||||||||| ||| ||||
Sbjct: 28166400 cgatcatctccagctgagcct 28166420



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 235      ccttagcaagagcttgtctcgtctcgtcatat 266
                |||||||||||||||||||  |||| ||||||
Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatat 28166526



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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 157   aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
             |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 49813 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 49872

                                  
Query: 217   taatcatctccaactgggcct 237
               |||||||||| ||| ||||
Sbjct: 49873 cgatcatctccagctgagcct 49893



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 235   ccttagcaagagcttgtctcgtctcgtcatat 266
             |||||||||||||||||||  |||| ||||||
Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatat 49999



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>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5,
            complete sequence
          Length = 182066

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  tggcagaatcaaatttgttt 139
            ||||||||||||||||||||
Sbjct: 9480 tggcagaatcaaatttgttt 9461



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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    taaatacagcagaatatatt 73
             ||||||||||||||||||||
Sbjct: 89696 taaatacagcagaatatatt 89677



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       ccactatagtagcctgttat 42
                ||||||||||||||||||||
Sbjct: 16754860 ccactatagtagcctgttat 16754841



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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taaatacagcagaatatatt 73
             ||||||||||||||||||||
Sbjct: 45601 taaatacagcagaatatatt 45620



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>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence
          Length = 43180

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 53    ctaaatacagcagaatatattcagttaa 80
             |||||| |||||||||||||||| ||||
Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737



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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ccactatagtagcctgttat 42
              ||||||||||||||||||||
Sbjct: 106347 ccactatagtagcctgttat 106328



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>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176833

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   agacattttcagagagtcca 206
             ||||||||||||||||||||
Sbjct: 33908 agacattttcagagagtcca 33927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,438,132
Number of Sequences: 3902068
Number of extensions: 2438132
Number of successful extensions: 46035
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45997
Number of HSP's gapped (non-prelim): 38
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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