ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 30 1.4
2ACSA_PASMU (Q9CMW1) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (A... 28 4.2
3EX1_BUCBP (Q89A43) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonucl... 28 7.2
4IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precu... 27 9.3
5YKW2_YEAST (P35995) Putative 82.2 kDa transcriptional regulatory... 27 9.3
6RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination prote... 27 9.3

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 360 SPRSSYVTAWCSWRTTSGSVWQCPRRPRPKATSLR-LAYITNLPEHTHSWVGSSIFV 193
           SP +S+ T  CS  T SG +WQC   P P   S++  A+I+   E  +   G   +V
Sbjct: 396 SPGTSFNTT-CSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYV 451



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>ACSA_PASMU (Q9CMW1) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA|
           ligase) (Acyl-activating enzyme)
          Length = 653

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 362 GAQGRPT*RLGAHGGRLPGAFGSAQEGQGLRPLPCVWRTSPICQSILIVGWVRQYSLLCF 183
           G+ G+P   + + GG L GA  S +     +P    W T+        VGW+  +S +C+
Sbjct: 269 GSTGKPKGIVHSTGGYLLGALNSFRNVFDNKPNDIFWCTAD-------VGWITGHSYVCY 321



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>EX1_BUCBP (Q89A43) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA|
           deoxyribophosphodiesterase) (dRPase)
          Length = 481

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 242 PICQSILIVGWVRQYSLLCFVTEFEFQ*TNYTFVVHLKDCII 117
           P  +S+LI G   +Y+ L  V EFEF    Y+  +    CII
Sbjct: 59  PDPESVLITGISPKYTSLFGVNEFEFAKKIYSLFMKSDTCII 100



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>IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (xIGF-1R) (xIGFR) [Contains: Insulin-like
           growth factor 1 receptor alpha chain; Insulin-like
           growth factor 1 receptor beta chain]
          Length = 1358

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 108 YIQGLAVCITPAFCGTCGPNV 46
           +I GL +C+ PA    CGPN+
Sbjct: 12  WILGLLLCLGPAAAKVCGPNM 32



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>YKW2_YEAST (P35995) Putative 82.2 kDa transcriptional regulatory protein in|
           FRE2 5'region
          Length = 705

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 270 ATSLRLAYITNLPEHTHSWVGSSIFVAVFRYGI*VPINQLHLCRSLERLYY 118
           AT   +  ++NL   TH          +F + +  P+N LHLC ++   Y+
Sbjct: 463 ATLHMIGSLSNLYTLTHQ----DFDARIFNFSVLAPLNSLHLCFNVLETYF 509



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>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 300 WQCPRRPRPKATSLRLAYITNLPEHTHSWVGSSIFV 193
           WQ   +P P+  SL L ++  +PE  H +  SS+F+
Sbjct: 103 WQ--EKPSPQLFSLFLNFLQRIPETPHPYFFSSMFL 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,465,435
Number of Sequences: 219361
Number of extensions: 1090098
Number of successful extensions: 2401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2400
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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