>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score =  724 bits (365), Expect = 0.0
 Identities = 365/365 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcaccaacgttgctataattgatttagggaagtgcataggctaaaacattaggaccaca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 ggcaccaacgttgctataattgatttagggaagtgcataggctaaaacattaggaccaca 1337

                                                                        
Query: 61   agttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaata 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 agttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaata 1277

                                                                        
Query: 121  atacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 atacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgta 1217

                                                                        
Query: 181  acgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctctggcaaatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 acgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctctggcaaatt 1157

                                                                        
Query: 241  ggtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgggcactgcca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 ggtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgggcactgcca 1097

                                                                        
Query: 301  aacgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 aacgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggct 1037

                 
Query: 361  cccag 365
            |||||
Sbjct: 1036 cccag 1032

>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Minus

                                                                        
Query: 272  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 331
            ||||||||| | || ||||||||| ||||  |||||||||||||| ||||||||||||||
Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232

                                             
Query: 332  caagccgtcacgtaggacgaccttgggctccca 364
            |||||||||||| || |||||||| ||||||||
Sbjct: 1231 caagccgtcacgcagaacgaccttaggctccca 1199



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 119  taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 178
            |||||||||||||||| |||||||||| | |||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

                    
Query: 179  taacgaaa 186
            ||| ||||
Sbjct: 1359 taatgaaa 1352



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                        
Query: 6    caacgttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagtt 64
            |||| |||||||||| |||||||||| || |||| |||| |||||| || ||||||||||
Sbjct: 1527 caacattgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagtt 1469

                       
Query: 65   ccgcaaaaagc 75
            | | |||||||
Sbjct: 1468 ctgtaaaaagc 1458

>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                        
Query: 272  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 331
            |||||||||||  ||||||||||| ||||  ||||||||||| || ||||||||||||||
Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476

                                             
Query: 332  caagccgtcacgtaggacgaccttgggctccca 364
            |||||||||    ||||||| ||||||||||||
Sbjct: 1475 caagccgtccttcaggacgatcttgggctccca 1443



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 113  ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 171
            ||||||| |||||||| |||||| ||| |||  ||||| || |  |||||||||||||||
Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625

                           
Query: 172  aattccgtaacgaaa 186
            |||||||||| ||||
Sbjct: 1624 aattccgtaatgaaa 1610

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                           
Query: 271     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
               ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 9412292 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9412233

                                                 
Query: 331     ccaagccgtcacgtaggacgaccttgggctccca 364
               ||||||| ||||| || |||| ||||||||||||
Sbjct: 9412232 ccaagccatcacgcagaacgatcttgggctccca 9412199



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 6       caacgttgctataattgatttagg 29
               |||| |||||||||||||||||||
Sbjct: 9412547 caacattgctataattgatttagg 9412524



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 113     ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403

>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                          
Query: 271    cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
              ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 109692 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 109633

                                                
Query: 331    ccaagccgtcacgtaggacgaccttgggctccca 364
              ||||||| ||||| || |||| ||||||||||||
Sbjct: 109632 ccaagccatcacgcagaacgatcttgggctccca 109599



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 6      caacgttgctataattgatttagg 29
              |||| |||||||||||||||||||
Sbjct: 109947 caacattgctataattgatttagg 109924



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 113    ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
              ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                           
Query: 271     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
               ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 9410413 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9410354

                                                 
Query: 331     ccaagccgtcacgtaggacgaccttgggctccca 364
               ||||||| ||||| || |||| ||||||||||||
Sbjct: 9410353 ccaagccatcacgcagaacgatcttgggctccca 9410320



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 6       caacgttgctataattgatttagg 29
               |||| |||||||||||||||||||
Sbjct: 9410668 caacattgctataattgatttagg 9410645



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 113     ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524

>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1053

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 303  cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 362
            ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963

              
Query: 363  ca 364
            ||
Sbjct: 962  ca 961

>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 271  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
            ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 1542 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1483

                                              
Query: 331  ccaagccgtcacgtaggacgaccttgggctccca 364
            ||||||| ||||| || |||| ||||||||||||
Sbjct: 1482 ccaagccatcacgcagaacgatcttgggctccca 1449



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    caacgttgctataattgatttagg 29
            |||| |||||||||||||||||||
Sbjct: 1797 caacattgctataattgatttagg 1774



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 113  ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653

>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 271  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
            ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 1153 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1094

                                              
Query: 331  ccaagccgtcacgtaggacgaccttgggctccca 364
            ||||||| ||||| || |||| ||||||||||||
Sbjct: 1093 ccaagccatcacgcagaacgatcttgggctccca 1060



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    caacgttgctataattgatttagg 29
            |||| |||||||||||||||||||
Sbjct: 1408 caacattgctataattgatttagg 1385



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 113  ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264

>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                       
Query: 271 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 330
           ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 207 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 148

                                             
Query: 331 ccaagccgtcacgtaggacgaccttgggctccca 364
           ||||||| ||||| || |||| | ||||||||||
Sbjct: 147 ccaagccatcacgcagaacgatcctgggctccca 114



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 6   caacgttgctataattgatttagg 29
           |||| |||||||||||||||||||
Sbjct: 462 caacattgctataattgatttagg 439



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 113 ttctaataatacaatctttcaagtgaacgacaaaggtgta 152
           ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318

>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 304 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 363
           |||||||||| || ||||||||||||||||||||||| |  |||| ||  ||||||||||
Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728

            
Query: 364 a 364
           |
Sbjct: 727 a 727



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 162 ttggaactcaaattccgtaacgaaa 186
           |||||||||||||||||||| ||||
Sbjct: 921 ttggaactcaaattccgtaatgaaa 897

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     taattgatttagggaagtgc 36
              ||||||||||||||||||||
Sbjct: 657464 taattgatttagggaagtgc 657445

>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence
          Length = 35325

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaagtttctaataatacaat 127
             ||||||||||||||||||||
Sbjct: 20319 aaagtttctaataatacaat 20300

>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aaagtttctaataatacaat 127
              ||||||||||||||||||||
Sbjct: 103537 aaagtttctaataatacaat 103518

>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18,
              complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    taaagtttctaataatacaa 126
              ||||||||||||||||||||
Sbjct: 107638 taaagtttctaataatacaa 107657

>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence
          Length = 195101

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tatataaagtttctaataat 122
             ||||||||||||||||||||
Sbjct: 13115 tatataaagtttctaataat 13096

>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 gacaaaggtgtaattggttt 160
           ||||||||||||||||||||
Sbjct: 337 gacaaaggtgtaattggttt 318

>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence
          Length = 193884

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    ttggccttcttgggcactgc 298
              ||||||||||||||||||||
Sbjct: 153079 ttggccttcttgggcactgc 153098

>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   gacaaaggtgtaattggttt 160
             ||||||||||||||||||||
Sbjct: 76946 gacaaaggtgtaattggttt 76927

>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
              complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    taaagtttctaataatacaa 126
              ||||||||||||||||||||
Sbjct: 165685 taaagtttctaataatacaa 165666

>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
              sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    tatgagtatgctctggcaaa 238
              ||||||||||||||||||||
Sbjct: 208325 tatgagtatgctctggcaaa 208306

>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete
             sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ttggccttcttgggcactgc 298
             ||||||||||||||||||||
Sbjct: 53068 ttggccttcttgggcactgc 53049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,706,159
Number of Sequences: 3902068
Number of extensions: 2706159
Number of successful extensions: 48358
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48260
Number of HSP's gapped (non-prelim): 97
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)