ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12h12 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 94.0 bits (232), Expect = 9e-20 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 5/51 (9%) Frame = -3 Query: 280 EWNNDPDRKNRHGAGVVPYVLLRPS-----DGDPTDEKMVMEMGIPNSISI 143 EWNNDPDRKNRHGAG+VPYVLLRPS DGDPTDEKMVMEMGIPNSISI Sbjct: 886 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 79.3 bits (194), Expect = 2e-15 Identities = 36/46 (78%), Positives = 39/46 (84%) Frame = -3 Query: 280 EWNNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 EWN D R+NRHGAGVVPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 887 EWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/44 (56%), Positives = 29/44 (65%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 NN+P+ KNR GAG+VPY LL+ P E V GIPNSISI Sbjct: 858 NNNPENKNRCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/44 (47%), Positives = 28/44 (63%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N DP R+NR GAGV+PY L+ PS G + G+PNS++I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Frame = -3 Query: 280 EWNNDPDRKNRHGAGVVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 143 + N + KNR+G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 830 DMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 143 N+DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 818 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 39.7 bits (91), Expect = 0.002 Identities = 24/44 (54%), Positives = 26/44 (59%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N D RKNR GAGV+PY LL PS V G+PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 39.7 bits (91), Expect = 0.002 Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGD-PTDEKMVMEMGIPNSISI 143 N DP RKNR G PY LL P+ D D + GIPNSISI Sbjct: 826 NKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 38.5 bits (88), Expect = 0.004 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N D KNR GAG++PY L++ P + V MGIPNS SI Sbjct: 886 NKDRKLKNRCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 38.5 bits (88), Expect = 0.004 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 143 N D KNR GAG++PY L++P SD T MGIPNS SI Sbjct: 903 NKDRKLKNRCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 38.1 bits (87), Expect = 0.006 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 143 N D KNR+G PY+LL P+ D T + GIPNSISI Sbjct: 822 NGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 37.4 bits (85), Expect = 0.010 Identities = 22/38 (57%), Positives = 24/38 (63%) Frame = -3 Query: 256 KNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 KNR GAGVV Y LL+ PT E V MG+P SISI Sbjct: 864 KNRAGAGVVKYELLK-----PTSEHGVTGMGVPYSISI 896
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 37.4 bits (85), Expect = 0.010 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 NND +NRHG +PY LL PS ++ + GIPNSISI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 36.6 bits (83), Expect = 0.017 Identities = 21/44 (47%), Positives = 26/44 (59%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 NND +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPS-----SEEGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 36.2 bits (82), Expect = 0.022 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -3 Query: 280 EWNNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 E N D +NR+G +PY LL PS E+ + GIPNSISI Sbjct: 813 EKNKDETLRNRYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 34.7 bits (78), Expect = 0.065 Identities = 22/46 (47%), Positives = 25/46 (54%) Frame = -3 Query: 280 EWNNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 E N+D KNR G +PY LL PS E V GIPNS+SI Sbjct: 819 ERNDDETLKNRTGLVKMPYTLLFPS-----SEGGVTGRGIPNSVSI 859
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 34.3 bits (77), Expect = 0.084 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTD-EKMVMEMGIPNSISI 143 N DP KNR G PY L+ P+ D + + GIPNSISI Sbjct: 819 NKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 33.9 bits (76), Expect = 0.11 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -3 Query: 280 EWNNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 E NND +NR G +PY LL PS ++ + GIPNSISI Sbjct: 817 ERNNDEKLRNRCGPVQMPYTLLLPS-----SKEGLTFRGIPNSISI 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 33.9 bits (76), Expect = 0.11 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N+DP +NR G +PY LL S E+ + GIPNSISI Sbjct: 826 NSDPSLRNRTGPVQLPYTLLHRS-----SEEGLTFKGIPNSISI 864
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 33.9 bits (76), Expect = 0.11 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 NNDP +R G +PY LL PS ++ + GIPNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPS-----SKEGLTFRGIPNSISI 864
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 33.1 bits (74), Expect = 0.19 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -3 Query: 274 NNDPDRK-NRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 NNDP + NR G +PY LL PS E+ + GIPNSISI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSS-----EEGLTFRGIPNSISI 839
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 32.7 bits (73), Expect = 0.25 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N+ KNR G VPY LL P T E+ + GIPNS+SI Sbjct: 821 NSHKSWKNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 32.3 bits (72), Expect = 0.32 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 NND NR G +PY LL P+ T GIPNSISI Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSEGLTCR------GIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 31.6 bits (70), Expect = 0.55 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N D +NR+G +PY +L P+ +++ + GIPNSISI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPT----CEDEGLTFRGIPNSISI 862
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 143 N D NR G PY LL P T E + GIPNS+SI Sbjct: 823 NGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861
>SPI1_PIG (Q6PKU1) Transcription factor PU.1| Length = 270 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 56 FPLYPPPGQETE--DTLIYA*LS-----YTHTQGSSNGDAVGDAHLHH 178 FPL PPP ++ DT +Y + Y + G S+ D D H HH Sbjct: 10 FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHH 57
>SPI1_HUMAN (P17947) Transcription factor PU.1 (31 kDa transforming protein)| Length = 270 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +2 Query: 56 FPLYPPPGQETE--DTLIYA*LS-----YTHTQGSSNGDAVGDAHLHH 178 FPL PPP ++ DT +Y + Y + G S+ D D H HH Sbjct: 10 FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFHPHH 57
>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit| 2 (ACDS complex epsilon subunit 2) Length = 170 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -1 Query: 81 WPGGGYNGNEHQIIIKGHDDIYI 13 WPG NGN II+ GH YI Sbjct: 99 WPGLDGNGNYDTIILLGHKKYYI 121
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 274 NNDPDRKNRHGAGVVPYVLLRPS 206 NND +NR G +PY LL PS Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPS 731
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 27.7 bits (60), Expect = 7.9 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 62 LYPPPGQETEDTLIYA*LSYTHTQGSSNGDAVGDAH-LHHHLLVRGITVRRPEQHIRHH 235 LY PG T + + LS G G A G A L H LVRG T E H HH Sbjct: 218 LYSQPGGFTVNGM----LSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHH 272
>TNR1B_HUMAN (P20333) Tumor necrosis factor receptor superfamily member 1B| precursor (Tumor necrosis factor receptor 2) (TNF-R2) (Tumor necrosis factor receptor type II) (p75) (p80 TNF-alpha receptor) (CD120b antigen) (Etanercept) [Contains: Tumor necrosi Length = 461 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -2 Query: 233 GAVCAAQAVGR*SHGREDGDGDGHPQQHLHLSCLVCVCNSTRRK*ECLQSLGPAVG 66 G + R S G D GH Q ++++C+V VC+S+ +C +G Sbjct: 352 GVEASGAGEARASTGSSDSSPGGHGTQ-VNVTCIVNVCSSSDHSSQCSSQASSTMG 406
>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 497 Score = 27.7 bits (60), Expect = 7.9 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 62 LYPPPGQETEDTLIYA*LSYTHTQGSSNGDAVGDAH-LHHHLLVRGITVRRPEQHIRHH 235 LY PG T + + LS G G A G A L H LVRG T E H HH Sbjct: 220 LYSQPGGFTVNGM----LSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHH 274
>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 500 Score = 27.7 bits (60), Expect = 7.9 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 62 LYPPPGQETEDTLIYA*LSYTHTQGSSNGDAVGDAH-LHHHLLVRGITVRRPEQHIRHH 235 LY PG T + + LS G G A G A L H LVRG T E H HH Sbjct: 221 LYSQPGGFTVNGM----LSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHH 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,731,723 Number of Sequences: 219361 Number of extensions: 800020 Number of successful extensions: 1987 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1970 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
