>DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (MFE-2)|
           (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid
           dehydrogenase 4) (17-beta-HSD 4) [Includes:
           D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107)
           (3-alpha,7-alpha,12-alpha-trihydroxy-5
          Length = 734

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 107 VRDNWSSVCDLTNKRKQQ 160
           VRDNW  +CD +N  K Q
Sbjct: 268 VRDNWEKICDFSNASKPQ 285

>PQQE_METEX (P71517) Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone|
           biosynthesis protein E)
          Length = 384

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 291 RSGSWMKNVCRNSSKHRGQF--CLCKCLVDTGLGFHARDDNNNGPCC 157
           R  SWMK  CR+  +    +  C C+ L  TG      D  N  P C
Sbjct: 301 RGTSWMKEPCRSCDRREKDWGGCRCQALALTG------DAANTDPAC 341

>HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC)|
          Length = 543

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -1

Query: 312 VRFDCC*RSGSWMKNVCR-NSSKHRG-----QFCLCKC 217
           V+F+C  R+ SW +  CR N    +G     +FC C+C
Sbjct: 143 VQFNCIGRARSWNEKQCRQNMWTKKGYDLAFRFCSCRC 180

>DED1_YARLI (Q6CB69) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 618

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 161 HGPXXXXXXA*KPKPVSTRHLHKQNWPRCLLL 256
           HGP         P+P   RH+HK+ +P  L+L
Sbjct: 225 HGPSPT------PQPTGPRHMHKKAYPTALVL 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,661,337
Number of Sequences: 219361
Number of extensions: 656679
Number of successful extensions: 1451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)