ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRAW_THEFY (Q47QX7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-) 28 7.6
2AGUA_STRR6 (Q8DQ68) Putative agmatine deiminase (EC 3.5.3.12) (A... 27 10.0
3AGUA_STRPN (Q97RA4) Putative agmatine deiminase (EC 3.5.3.12) (A... 27 10.0

>MRAW_THEFY (Q47QX7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 330

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = +2

Query: 29  LSSLKVETKHGYHHKVKVTTL*LDESEIGFLAHPQRFSYGV-LQTSMSVLQLQVDAD*FD 205
           L  L ++  HG    + V++  LDE+E GF      +SY   L   M   Q +  AD  +
Sbjct: 104 LDELGIDRVHGLLFDLGVSSPQLDEAERGF-----AYSYDAPLDMRMDRTQERTAADIVN 158

Query: 206 CFHRTEI-----LFQDTRMAIKIAALIFLHYARRP 295
            +  +E+     ++ + R A +IA  I    A+ P
Sbjct: 159 TYPASELTRIFRVYGEERFAARIAQAIVRQRAKEP 193



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>AGUA_STRR6 (Q8DQ68) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 361

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 251 WPFSYPGIIFLCDENNQINQRRLEAVERSCWSVKP 147
           W  +Y G+    +E++Q+  R  EA+ER  +  KP
Sbjct: 114 WGGTYDGLYQDYEEDDQVASRFAEALERPVYDAKP 148



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>AGUA_STRPN (Q97RA4) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 361

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 251 WPFSYPGIIFLCDENNQINQRRLEAVERSCWSVKP 147
           W  +Y G+    +E++Q+  R  EA+ER  +  KP
Sbjct: 114 WGGTYDGLYQDYEEDDQVASRFAEALERPVYDAKP 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,483,611
Number of Sequences: 219361
Number of extensions: 763527
Number of successful extensions: 1495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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