ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12h08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds Length = 3143 Score = 442 bits (223), Expect = e-121 Identities = 263/275 (95%), Gaps = 1/275 (0%) Strand = Plus / Minus Query: 1 gatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccgaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3101 gatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccgaca 3042 Query: 61 acaacaggtggatctccttgctaccaataccaaaccgagcatagatagatgagcatccct 120 |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 3041 acaacaggtggacctccttgctacca-tagcaaaccgagcatagatagatgagcatccct 2983 Query: 121 ctataaatacaagcacaaagaccggagcagatctccctgccgcttttgtggatagcaagt 180 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2982 ctataaatacaatcacaaagaccagagcagatctccctgccgcttttgtggatagcaagt 2923 Query: 181 acccatatacacattccgcatattagcttaactgaattggacgagcgatgctggcgtcat 240 | ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| Sbjct: 2922 atccatatacacattccgcatattagcttaactgagttggacgagcaacgctggcgtcat 2863 Query: 241 gagatttcactccgatggagcaattgctcgcctac 275 |||||||| |||| | ||||||||||||||||||| Sbjct: 2862 gagatttcgctccaacggagcaattgctcgcctac 2828
>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence Length = 202155 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 actgcaacattcaattctccc 24 ||||||||||||||||||||| Sbjct: 80340 actgcaacattcaattctccc 80320
>gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosome ul, complete sequence Length = 219854 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 atagatagatgagcatccctc 121 ||||||||||||||||||||| Sbjct: 6522 atagatagatgagcatccctc 6502
>dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02A14, TM0072a, complete sequence Length = 100740 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 atacacattccgcatattagcttaa 211 |||||||||||||||||||| |||| Sbjct: 4022 atacacattccgcatattagattaa 4046
>gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases 501860 to 700960 (section 3 of 3) of the complete sequence Length = 199101 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gcttttgtggatagcaagta 181 |||||||||||||||||||| Sbjct: 194392 gcttttgtggatagcaagta 194373
>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence Length = 204437 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gcttttgtggatagcaagta 181 |||||||||||||||||||| Sbjct: 96556 gcttttgtggatagcaagta 96537
>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE Length = 119528 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctctataaatacaagcaca 137 |||||||||||||||||||| Sbjct: 9634 cctctataaatacaagcaca 9615
>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence Length = 85905 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cctctataaatacaagcaca 137 |||||||||||||||||||| Sbjct: 64740 cctctataaatacaagcaca 64759 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cctctataaatacaagcaca 137 |||||||||||||||||||| Sbjct: 55200 cctctataaatacaagcaca 55219
>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel 1 (Ecac1), epithelial calcium channel 2 (Ecac2), and ephrin type A receptor (Mep) genes, complete cds; and T cell receptor beta chain (Tcr) gene, partial cds Length = 169781 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gcttttgtggatagcaagta 181 |||||||||||||||||||| Sbjct: 142129 gcttttgtggatagcaagta 142148
>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE Length = 106640 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctctataaatacaagcaca 137 |||||||||||||||||||| Sbjct: 105678 cctctataaatacaagcaca 105659 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctctataaatacaagcaca 137 |||||||||||||||||||| Sbjct: 96032 cctctataaatacaagcaca 96013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,193,935 Number of Sequences: 3902068 Number of extensions: 2193935 Number of successful extensions: 30126 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30112 Number of HSP's gapped (non-prelim): 13 length of query: 297 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 275 effective length of database: 17,147,199,772 effective search space: 4715479937300 effective search space used: 4715479937300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
