>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 459

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 106 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSMW*GWXE 285
           P +   A L   HH A+    + NNL+ SE Q  +   +HQ      K   Q M      
Sbjct: 357 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVMHYPGGY 416

Query: 286 GSP 294
           GSP
Sbjct: 417 GSP 419

>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 458

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 106 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSMW*GWXE 285
           P +   A L   HH A+    + NNL+ SE Q  +   +HQ      K   Q M      
Sbjct: 356 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKTYEQVMHYPGGY 415

Query: 286 GSP 294
           GSP
Sbjct: 416 GSP 418

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 90  VATHQSSYSHYRVSQPCTPLRL----LTVPQL*QPAIF*NTSSESPKEPPNRGHTP 245
           V+  Q S S   V+ P  P       +  PQL QPA+  N+ S  P   P   HTP
Sbjct: 791 VSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPHHTP 846

>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor|
           [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)
           (Cellobiase); Beta-xylosidase (EC 3.2.1.37)
           (1,4-beta-D-xylan xylohydrolase) (Xylan
           1,4-beta-xylosidase)]
          Length = 654

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 238 WPRFGGSFGDSELVFQKIAGCYSCGTVNKRSGVH 137
           WPR  G+FG+   + +K+   Y  G  N ++G++
Sbjct: 225 WPRIDGTFGEDPDLTKKMVRGYVTGMQNGKNGLN 258

>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog|
          Length = 1812

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 48   QKPCKVSKSHITKVVATHQSSYSHYRVSQPCTPLRLLT-VPQL*QPAIF*NT---SSESP 215
            QK    S+  + +   +  SS  H    + C P R L   P L       ++    SESP
Sbjct: 1475 QKRNSPSQEELLQPAGSEASSEPHNSTGESCLPRRELEGTPYLGSGISLFSSRDPESESP 1534

Query: 216  KEPPNRGHTP 245
            KEP + G TP
Sbjct: 1535 KEPAHIGTTP 1544

>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 457

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 106 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSM 267
           P +   A L   HH A+    + NNL+ SE Q  +   +HQ      K   Q M
Sbjct: 356 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVM 409


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,136,567
Number of Sequences: 219361
Number of extensions: 830183
Number of successful extensions: 1909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)