ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAT3_HUMAN (O75387) Large neutral amino acids transporter small ... 30 1.7
2LAT3_MOUSE (Q8BSM7) Large neutral amino acids transporter small ... 30 2.2
3S40A1_HUMAN (Q9NP59) Solute carrier family 40 member 1 (Ferropor... 28 4.9
4S40A1_RAT (Q923U9) Solute carrier family 40 member 1 (Ferroporti... 28 6.4
5S40A1_MOUSE (Q9JHI9) Solute carrier family 40 member 1 (Ferropor... 28 6.4
6HIS81_GLUOX (Q5FRR4) Histidinol-phosphate aminotransferase 1 (EC... 28 8.4

>LAT3_HUMAN (O75387) Large neutral amino acids transporter small subunit 3|
           (L-type amino acid transporter 3) (Solute carrier family
           43 member 1) (Prostate cancer overexpressed gene 1
           protein)
          Length = 559

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 121 MFGESQYSCIMCCPLLSYIPDYAV 50
           +FG  Q  C++ CPL+ YI D+ +
Sbjct: 358 VFGAMQLLCLLTCPLIGYIMDWRI 381



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>LAT3_MOUSE (Q8BSM7) Large neutral amino acids transporter small subunit 3|
           (L-type amino acid transporter 3) (Solute carrier family
           43 member 1)
          Length = 564

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 121 MFGESQYSCIMCCPLLSYIPDYAV 50
           +FG  Q  C++ CPL+ YI D+ +
Sbjct: 358 IFGVMQLLCLLTCPLIGYIMDWRI 381



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>S40A1_HUMAN (Q9NP59) Solute carrier family 40 member 1 (Ferroportin-1)|
           (Iron-regulated transporter 1)
          Length = 571

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 211 LVSGSTVT*ICLLRT*IFEW--RLCTIFQLCLMFGESQYSCIMCCPLLSYIPDYAVSLS 41
           L+  S +T I  + T  F W  R C + +  L+ G +Q SC++ C +  ++P   + LS
Sbjct: 345 LMGASAITGI--MGTVAFTWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLS 401



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>S40A1_RAT (Q923U9) Solute carrier family 40 member 1 (Ferroportin-1) (Cell|
           adhesion regulator) (CAR1)
          Length = 570

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 211 LVSGSTVT*ICLLRT*IFEW--RLCTIFQLCLMFGESQYSCIMCCPLLSYIPDYAVSLS 41
           L+  S +T I  + T  F W  R C + +  L  G +Q SC++ C +  ++P   + LS
Sbjct: 345 LMGASAITGI--MGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGSPLDLS 401



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>S40A1_MOUSE (Q9JHI9) Solute carrier family 40 member 1 (Ferroportin-1)|
           (Iron-regulated transporter 1) (Metal transporter
           protein 1) (MTP1)
          Length = 570

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 211 LVSGSTVT*ICLLRT*IFEW--RLCTIFQLCLMFGESQYSCIMCCPLLSYIPDYAVSLS 41
           L+  S +T I  + T  F W  R C + +  L  G +Q SC++ C +  ++P   + LS
Sbjct: 345 LMGASAITGI--MGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGSPLDLS 401



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>HIS81_GLUOX (Q5FRR4) Histidinol-phosphate aminotransferase 1 (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase 1)
          Length = 401

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
 Frame = -2

Query: 127 CLMFGESQYSCIMCCPLLSYI-------------PDYAVSLSSMHNES 23
           CLM G++  S I  CP  + I             PDYA SL+ + N+S
Sbjct: 197 CLMTGDAMQSLIDACPADTLIVIDEAYWEYARSSPDYADSLTILKNQS 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,956,391
Number of Sequences: 219361
Number of extensions: 538952
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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