ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YAAU_ECOLI (P31679) Hypothetical metabolite transport protein yaaU 29 3.7
2CXI_CONMI (P69498) I-superfamily conotoxin precursor 28 4.8
3CXI2_CONVX (P69501) I-superfamily conotoxin-2 precursor 28 4.8

>YAAU_ECOLI (P31679) Hypothetical metabolite transport protein yaaU|
          Length = 443

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 214 EQVVEGLKLHGAWTWLFVCGTMSVLFVGLS 125
           EQ+   LKL   W  L   GT++ LFVG S
Sbjct: 42  EQLTPALKLDADWIGLLGAGTLAGLFVGTS 71



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>CXI_CONMI (P69498) I-superfamily conotoxin precursor|
          Length = 67

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 185 WCVDMVVCLWNHVCLVCRPILCVSKFKKTATFHD 84
           +C   + C W   C  CR + C  +F K ATF +
Sbjct: 35  YCTPYLPCCWGICCDTCRNV-CHLRFGKRATFQE 67



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>CXI2_CONVX (P69501) I-superfamily conotoxin-2 precursor|
          Length = 67

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 185 WCVDMVVCLWNHVCLVCRPILCVSKFKKTATFHD 84
           +C   + C W   C  CR + C  +F K ATF +
Sbjct: 35  YCTPYLPCCWGICCDTCRNV-CHLRFGKRATFQE 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,720,031
Number of Sequences: 219361
Number of extensions: 655067
Number of successful extensions: 1360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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