ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z95331.2|HS941F9 Human DNA sequence from clone CTA-941F9 on ... 44 0.20
2gb|AC106779.3| Homo sapiens chromosome 16 clone RP11-343H19, com... 44 0.20
3dbj|AB051572.1| Aphis gossypii mRNA for GrpE, complete cds 44 0.20
4emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chro... 42 0.81
5emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chr... 42 0.81
6gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 42 0.81
7gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 42 0.81
8gb|DQ011272.1| Oikopleura dioica eyes absent (eya) gene, complet... 40 3.2
9emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in ... 40 3.2
10emb|BX649331.16| Zebrafish DNA sequence from clone DKEY-12N3 in ... 40 3.2
11gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 40 3.2
12gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, comp... 40 3.2
13emb|BX465211.8| Zebrafish DNA sequence from clone CH211-142D23 i... 40 3.2
14gb|AC024882.1| Caenorhabditis elegans cosmid Y9C9A, complete seq... 40 3.2
15gb|AC013602.4|AC013602 Homo sapiens, clone RP11-10C6, complete s... 40 3.2
16gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O... 40 3.2
17gb|AC069550.4|AC069550 Sequence of chromosome 2 clone RP11-471B2... 40 3.2
18gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, com... 40 3.2
19gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, com... 40 3.2
20gb|AF254136.3| Homo sapiens chromosome 8 clone RP11-386F22, RP11... 40 3.2
21gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q... 40 3.2

>emb|Z95331.2|HS941F9 Human DNA sequence from clone CTA-941F9 on chromosome 22q13, complete
              sequence
          Length = 127587

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 198    ccttcaactacctgttcaaatg 219
              ||||||||||||||||||||||
Sbjct: 116078 ccttcaactacctgttcaaatg 116057



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>gb|AC106779.3| Homo sapiens chromosome 16 clone RP11-343H19, complete sequence
          Length = 158297

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 87    atgaaaagtggcagttttcttg 108
             ||||||||||||||||||||||
Sbjct: 92561 atgaaaagtggcagttttcttg 92540



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>dbj|AB051572.1| Aphis gossypii mRNA for GrpE, complete cds
          Length = 881

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 accttcaactacctgttcaaat 218
           ||||||||||||||||||||||
Sbjct: 666 accttcaactacctgttcaaat 645



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>emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 88711

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   aacaagacagacatggttcca 158
             |||||||||||||||||||||
Sbjct: 87086 aacaagacagacatggttcca 87106



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>emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chromosome 6 Contains
           the 3' part of a novel gene, complete sequence
          Length = 157929

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 aacaagacagacatggttcca 158
           |||||||||||||||||||||
Sbjct: 375 aacaagacagacatggttcca 395



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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   aaacaagacagacatggttcc 157
             |||||||||||||||||||||
Sbjct: 10044 aaacaagacagacatggttcc 10064



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>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   aaacaagacagacatggttcc 157
             |||||||||||||||||||||
Sbjct: 97179 aaacaagacagacatggttcc 97199



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>gb|DQ011272.1| Oikopleura dioica eyes absent (eya) gene, complete cds
          Length = 43001

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    gcagttttcttgaattttga 116
             ||||||||||||||||||||
Sbjct: 35618 gcagttttcttgaattttga 35599



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>emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in linkage group 21,
              complete sequence
          Length = 185814

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     taaatcatgaaaagtggcagtttt 104
              |||||||| |||||||||||||||
Sbjct: 154062 taaatcataaaaagtggcagtttt 154085



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>emb|BX649331.16| Zebrafish DNA sequence from clone DKEY-12N3 in linkage group 11,
             complete sequence
          Length = 252675

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   cttgaattttgacacacaca 124
             ||||||||||||||||||||
Sbjct: 38706 cttgaattttgacacacaca 38725



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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    acagccttggatttagtaataaat 85
             |||||||||||||| |||||||||
Sbjct: 11641 acagccttggattttgtaataaat 11618



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>gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, complete sequence
          Length = 151712

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    aacaagacagacatggttcc 157
              ||||||||||||||||||||
Sbjct: 138418 aacaagacagacatggttcc 138399



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>emb|BX465211.8| Zebrafish DNA sequence from clone CH211-142D23 in linkage group 17,
              complete sequence
          Length = 173690

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ttagtaataaatcatgaaaa 93
              ||||||||||||||||||||
Sbjct: 121635 ttagtaataaatcatgaaaa 121616



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>gb|AC024882.1| Caenorhabditis elegans cosmid Y9C9A, complete sequence
          Length = 66569

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     gatgaattcttgaaaattaagcga 32
             ||||||||||||||||| ||||||
Sbjct: 60014 gatgaattcttgaaaatgaagcga 60037



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>gb|AC013602.4|AC013602 Homo sapiens, clone RP11-10C6, complete sequence
          Length = 152770

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    aacaagacagacatggttcc 157
              ||||||||||||||||||||
Sbjct: 111271 aacaagacagacatggttcc 111252



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>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete
             sequence
          Length = 39456

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    tggatttagtaataaatcatgaaa 92
             ||||||||||||| ||||||||||
Sbjct: 9978  tggatttagtaatgaatcatgaaa 10001



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>gb|AC069550.4|AC069550 Sequence of chromosome 2 clone RP11-471B2 containing Homo sapiens NRXNI
              gene, partial cds, complete sequence
          Length = 166054

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    aacaagacagacatggttcc 157
              ||||||||||||||||||||
Sbjct: 140103 aacaagacagacatggttcc 140122



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>gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, complete sequence
          Length = 200622

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aacaagacagacatggttcc 157
             ||||||||||||||||||||
Sbjct: 96245 aacaagacagacatggttcc 96264



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>gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, complete sequence
          Length = 215485

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aacaagacagacatggttcc 157
             ||||||||||||||||||||
Sbjct: 98729 aacaagacagacatggttcc 98710



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>gb|AF254136.3| Homo sapiens chromosome 8 clone RP11-386F22, RP11-820H12 map q24.2,
              complete sequence
          Length = 184865

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    aacaagacagacatggttcc 157
              ||||||||||||||||||||
Sbjct: 159177 aacaagacagacatggttcc 159196



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>gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q24.2, complete
             sequence
          Length = 170376

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aacaagacagacatggttcc 157
             ||||||||||||||||||||
Sbjct: 34385 aacaagacagacatggttcc 34404


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,657,863
Number of Sequences: 3902068
Number of extensions: 2657863
Number of successful extensions: 57220
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57196
Number of HSP's gapped (non-prelim): 24
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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