>Y567_COXBU (Q83DX5) UPF0054 protein CBU0567|
          Length = 152

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 94  LVLTHTHTKHTSPPAHFAHLATVRTLEFVG 183
           LV    H +H +  AHFAHL T   L  +G
Sbjct: 92  LVAEEAHAQHKTTEAHFAHLITHGFLHLLG 121

>Y538_NEIMB (Q9K0P7) UPF0054 protein NMB0538|
          Length = 169

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +1

Query: 88  PSLVLTHTHTKHTSPPAHFAHLATVRTLEFVGGAKTRAPLRNLLTANRQQTVRTRYMPQP 267
           P +VL     +  +P  HFAHL    TL  +G          ++ A   + +R    P P
Sbjct: 106 PQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNP 165

>YMV6_YEAST (Q04748) Hypothetical 104.7 kDa protein in NCA1-HMS1 intergenic|
           region
          Length = 898

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 ISPTLQPSEL*SSSAGQKRGRPCATYSRRIASRP 241
           I+P L+  +  SS +      PC  Y+RRI ++P
Sbjct: 658 INPLLESKQQVSSESSLSTSNPCRFYNRRIITKP 691

>KPB2_RABIT (P46018) Phosphorylase b kinase alpha regulatory chain, liver|
           isoform (Phosphorylase kinase alpha L subunit)
          Length = 1235

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +1

Query: 16  NRV*IKSIQVRLASNTPPTQLYSSPSLVLTHTHTKHTSPPA--HFAHLATVRTLE--FVG 183
           N + ++ +++ LA      ++   P+L    THT  T+  +  H A L+T+R LE  + G
Sbjct: 536 NEMIVEMLRIELAYLCTCWRMTGRPTLTFPITHTMLTNDGSDIHSAVLSTIRKLEDGYFG 595

Query: 184 GAKTR 198
           GA+ +
Sbjct: 596 GARVQ 600

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 58  NTPPTQLYSSPSLVL--THTHTKHTSPPA 138
           N  PT++ S P ++L  TH HT + SP A
Sbjct: 91  NVTPTEISSRPEILLGETHAHTLNASPSA 119

>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)|
          Length = 3336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 209 RKGALVFAPPTNSRVRTVARWAKCAGGDVCFVCVCVKTRDG 87
           RKG+ V A        T    A C GGD+C    C  T DG
Sbjct: 41  RKGSAVDASVQEESPVTKEDSALCGGGDICKSTSCDDTPDG 81

>RUVB_LEIXX (Q6AFB4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 347

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 163 RTL-EFVGGAKTRAPLRNLLTANRQQ 237
           RTL EFVG AK R  L+ LLTA R Q
Sbjct: 27  RTLAEFVGQAKVRGQLQLLLTAARMQ 52

>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 152 RWAKCAGGDVCFVC 111
           R  KC+GGDVCF C
Sbjct: 20  RKVKCSGGDVCFEC 33

>KPB2_MOUSE (Q8BWJ3) Phosphorylase b kinase alpha regulatory chain, liver|
           isoform (Phosphorylase kinase alpha L subunit)
          Length = 1235

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +1

Query: 16  NRV*IKSIQVRLASNTPPTQLYSSPSLVLTHTHTKHTSPPA--HFAHLATVRTLE--FVG 183
           N + ++ +++ LA      ++   P+L    THT  T+  +  H A L+T+R LE  + G
Sbjct: 536 NEMIVEMLRIELAYLCTCWRMTGRPTLTFPVTHTMLTNDGSDIHPAVLSTIRKLEDGYFG 595

Query: 184 GAKTR 198
           GA+ +
Sbjct: 596 GARVK 600


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,101,572
Number of Sequences: 219361
Number of extensions: 814233
Number of successful extensions: 2319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2318
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)