>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 2e-42
 Identities = 136/151 (90%)
 Strand = Plus / Plus

                                                                            
Query: 177      ctcaaagcatcctgtccgagaggctgggcagccggcggaagaagttgacggccgcggcgg 236
                |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |  |
Sbjct: 22864656 ctcagagcatcctgtcggagaggctgggcagccgccggaagaagttgacggccgccggcg 22864715

                                                                            
Query: 237      gcatggggtcccggaacatgggatggcggaggtagtagaacccgctggccaccgccacca 296
                ||||||||||||||||||| || |||||||||||||||||||||| ||| || |||||||
Sbjct: 22864716 gcatggggtcccggaacatcgggtggcggaggtagtagaacccgccggcgacggccacca 22864775

                                               
Query: 297      tcttgggcggcatcgcatacagcgccacggc 327
                |||||| |||||| || |||||||| |||||
Sbjct: 22864776 tcttggacggcatggcgtacagcgcgacggc 22864806

>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score =  180 bits (91), Expect = 2e-42
 Identities = 136/151 (90%)
 Strand = Plus / Plus

                                                                         
Query: 177   ctcaaagcatcctgtccgagaggctgggcagccggcggaagaagttgacggccgcggcgg 236
             |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |  |
Sbjct: 68213 ctcagagcatcctgtcggagaggctgggcagccgccggaagaagttgacggccgccggcg 68272

                                                                         
Query: 237   gcatggggtcccggaacatgggatggcggaggtagtagaacccgctggccaccgccacca 296
             ||||||||||||||||||| || |||||||||||||||||||||| ||| || |||||||
Sbjct: 68273 gcatggggtcccggaacatcgggtggcggaggtagtagaacccgccggcgacggccacca 68332

                                            
Query: 297   tcttgggcggcatcgcatacagcgccacggc 327
             |||||| |||||| || |||||||| |||||
Sbjct: 68333 tcttggacggcatggcgtacagcgcgacggc 68363

>ref|NM_192546.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3243

 Score =  178 bits (90), Expect = 7e-42
 Identities = 132/146 (90%)
 Strand = Plus / Minus

                                                                        
Query: 182  agcatcctgtccgagaggctgggcagccggcggaagaagttgacggccgcggcgggcatg 241
            ||||||||||| ||||||||||||||||| |||||||||||||||||||| |  ||||||
Sbjct: 3239 agcatcctgtcggagaggctgggcagccgccggaagaagttgacggccgccggcggcatg 3180

                                                                        
Query: 242  gggtcccggaacatgggatggcggaggtagtagaacccgctggccaccgccaccatcttg 301
            |||||||||||||| || |||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 3179 gggtcccggaacatcgggtggcggaggtagtagaacccgccggcgacggccaccatcttg 3120

                                      
Query: 302  ggcggcatcgcatacagcgccacggc 327
            | |||||| || |||||||| |||||
Sbjct: 3119 gacggcatggcgtacagcgcgacggc 3094

>ref|XM_476719.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2457

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                        
Query: 203  ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
            |||||||| |||||||||||||  ||||  || |||||  ||||||||||||| || |||
Sbjct: 2432 ggcagccgccggaagaagttgatcgccggcgccggcatccggtcccggaacatcgggtgg 2373

                              
Query: 263  cggaggtagtagaacccg 280
            ||||||||||||||||||
Sbjct: 2372 cggaggtagtagaacccg 2355

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                           
Query: 203     ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
               |||||||| |||||||||||||  ||||  || |||||  ||||||||||||| || |||
Sbjct: 3518340 ggcagccgccggaagaagttgatcgccggcgccggcatccggtcccggaacatcgggtgg 3518399

                                 
Query: 263     cggaggtagtagaacccg 280
               ||||||||||||||||||
Sbjct: 3518400 cggaggtagtagaacccg 3518417

>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                         
Query: 203   ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
             |||||||| |||||||||||||  ||||  || |||||  ||||||||||||| || |||
Sbjct: 56290 ggcagccgccggaagaagttgatcgccggcgccggcatccggtcccggaacatcgggtgg 56349

                               
Query: 263   cggaggtagtagaacccg 280
             ||||||||||||||||||
Sbjct: 56350 cggaggtagtagaacccg 56367

>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170,
             complete sequence
          Length = 101172

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                         
Query: 236   ggcatggggtcccggaacatgggatggcggaggtagtagaacccgctggccaccgccacc 295
             ||||| |||| |||||||||||| || ||||||||||| |||||    ||||||||||||
Sbjct: 68140 ggcattgggttccggaacatggggtgccggaggtagtaaaaccccaatgccaccgccacc 68199

                          
Query: 296   atcttgggcggca 308
              |||| |||||||
Sbjct: 68200 gtcttcggcggca 68212

>ref|XM_469033.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3363

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 203  ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
            ||||| |||||||||||||||| | | ||||  ||||||  | | |||||| | || |||
Sbjct: 3338 ggcaggcggcggaagaagttgaagccggcggacggcatgtcgccgcggaacctcgggtgg 3279

                             
Query: 263  cggaggtagtagaaccc 279
            |||||||||||||||||
Sbjct: 3278 cggaggtagtagaaccc 3262

>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17
              map near S16403, complete sequence
          Length = 172238

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 203    ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
              ||||| |||||||||||||||| | | ||||  ||||||  | | |||||| | || |||
Sbjct: 156767 ggcaggcggcggaagaagttgaagccggcggacggcatgtcgccgcggaacctcgggtgg 156826

                               
Query: 263    cggaggtagtagaaccc 279
              |||||||||||||||||
Sbjct: 156827 cggaggtagtagaaccc 156843

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 203      ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
                ||||| |||||||||||||||| | | ||||  ||||||  | | |||||| | || |||
Sbjct: 25040330 ggcaggcggcggaagaagttgaagccggcggacggcatgtcgccgcggaacctcgggtgg 25040389

                                 
Query: 263      cggaggtagtagaaccc 279
                |||||||||||||||||
Sbjct: 25040390 cggaggtagtagaaccc 25040406

>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 203   ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
             ||||| |||||||||||||||| | | ||||  ||||||  | | |||||| | || |||
Sbjct: 72137 ggcaggcggcggaagaagttgaagccggcggacggcatgtcgccgcggaacctcgggtgg 72196

                              
Query: 263   cggaggtagtagaaccc 279
             |||||||||||||||||
Sbjct: 72197 cggaggtagtagaaccc 72213

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 203      ggcagccggcggaagaagttgacggccgcggcgggcatggggtcccggaacatgggatgg 262
                ||||| |||||||||||||||| | | ||||  ||||||  | | |||||| | || |||
Sbjct: 25131639 ggcaggcggcggaagaagttgaagccggcggacggcatgtcgccgcggaacctcgggtgg 25131698

                                 
Query: 263      cggaggtagtagaaccc 279
                |||||||||||||||||
Sbjct: 25131699 cggaggtagtagaaccc 25131715

>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 226    ggccgcggcgggcatggggtcc 247
              ||||||||||||||||||||||
Sbjct: 124892 ggccgcggcgggcatggggtcc 124871

>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 226   ggccgcggcgggcatggggtcc 247
             ||||||||||||||||||||||
Sbjct: 77514 ggccgcggcgggcatggggtcc 77493

>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 226    ggccgcggcgggcatggggtcc 247
              ||||||||||||||||||||||
Sbjct: 343663 ggccgcggcgggcatggggtcc 343642

>gb|AC092505.2| Homo sapiens chromosome 3 clone RP11-644G8, complete sequence
          Length = 178977

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      aactataactcttcttgtctt 24
              |||||||||||||||||||||
Sbjct: 139528 aactataactcttcttgtctt 139508

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    ccgctggccaccgccaccatc 298
              |||||||||||||||||||||
Sbjct: 839450 ccgctggccaccgccaccatc 839430

>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 16     tcttgtctttaattatgtggtttgtatgctta 47
              |||||| ||| ||||||| |||||||||||||
Sbjct: 286381 tcttgtattttattatgttgtttgtatgctta 286412

>ref|XM_418844.1| PREDICTED: Gallus gallus similar to parathyroid hormone-responsive
           B1 gene isoform 1; PTH-responsive osteosarcoma B1
           protein (LOC420746), mRNA
          Length = 2325

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 279 cgctggccaccgccaccatcttgg 302
           |||||||||||||| |||||||||
Sbjct: 267 cgctggccaccgcccccatcttgg 290

>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tcttcttgtctttaattatg 32
             ||||||||||||||||||||
Sbjct: 88033 tcttcttgtctttaattatg 88014

>emb|AL160267.17| Human DNA sequence from clone RP11-117O7 on chromosome 9q21.11-21.33
             Contains a pseudogene similar to part of cytochrome c
             oxidase I (MTCO3) and a NADH dehydrogenase 2 (MTND2)
             pseudogene, complete sequence
          Length = 158315

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgtctttaattatgtggttt 38
             ||||||||||||||||||||
Sbjct: 76084 tgtctttaattatgtggttt 76065

>gb|AC132810.2| Homo sapiens chromosome 3 clone RP11-134J14, complete sequence
          Length = 146274

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    aatctcaaagcatcctgtcc 193
              ||||||||||||||||||||
Sbjct: 134251 aatctcaaagcatcctgtcc 134270

>emb|AJ005784.1|BPAJ5784 Brugia pahangi mRNA for heat shock protein 90
          Length = 2527

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  acaatcatcatcattgtgtt 74
           ||||||||||||||||||||
Sbjct: 516 acaatcatcatcattgtgtt 497

>emb|AJ005785.1|BPAJ5785 Brugia pahangi hsp90 gene and 5' region
          Length = 4686

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   acaatcatcatcattgtgtt 74
            ||||||||||||||||||||
Sbjct: 1899 acaatcatcatcattgtgtt 1880

>emb|AJ720848.1| Gallus gallus mRNA for hypothetical protein, clone 27l2
          Length = 2382

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 279 cgctggccaccgccaccatcttgg 302
           |||||||||||||| |||||||||
Sbjct: 97  cgctggccaccgcccccatcttgg 74

>gb|AC146662.3| Callithrix jacchus clone CH259-329B2, complete sequence
          Length = 136587

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 16    tcttgtctttaattatgtggtttgtatgctta 47
             |||||| ||| ||||||| |||||||||||||
Sbjct: 75078 tcttgtattttattatgttgtttgtatgctta 75109

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    cccgctggccaccgccacca 296
              ||||||||||||||||||||
Sbjct: 137860 cccgctggccaccgccacca 137879

>gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 177072

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    aatctcaaagcatcctgtcc 193
              ||||||||||||||||||||
Sbjct: 171416 aatctcaaagcatcctgtcc 171397

>dbj|D43747.2| Homo sapiens gene for voltage-dependent calcium channel alpha1 subunit,
             CACN4, complete cds
          Length = 29472

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aatctcaaagcatcctgtcc 193
             ||||||||||||||||||||
Sbjct: 13985 aatctcaaagcatcctgtcc 14004

>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 245   tcccggaacatggga-tggcggaggtagtagaaccc 279
             ||||||||||||||  ||||| ||||||||||||||
Sbjct: 53338 tcccggaacatgggggtggcgcaggtagtagaaccc 53303

>gb|AC154591.2| Mus musculus BAC clone RP23-370M19 from 16, complete sequence
          Length = 196385

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     tgtggtttgtatgcttatat 50
              ||||||||||||||||||||
Sbjct: 137163 tgtggtttgtatgcttatat 137144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,508,610
Number of Sequences: 3902068
Number of extensions: 3508610
Number of successful extensions: 66655
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66396
Number of HSP's gapped (non-prelim): 253
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)