ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 96 3e-20
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 78 5e-15
3LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC... 46 3e-05
4LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12) 42 5e-04
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 41 7e-04
6LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 40 0.002
7LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 40 0.002
8LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 39 0.004
9LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 38 0.006
10LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 38 0.008
11LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1... 38 0.008
12LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 37 0.010
13LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 37 0.013
14LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 37 0.017
15LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13... 36 0.022
16LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12) 35 0.049
17LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 35 0.064
18LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 35 0.064
19LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 35 0.064
20LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 35 0.064
21LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 34 0.11
22LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 33 0.19
23LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 33 0.19
24LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 32 0.42
25LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12) 29 2.7
26KCNA4_BOVIN (Q05037) Potassium voltage-gated channel subfamily A... 28 6.0
27LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment) 28 6.0
28ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex e... 28 7.9

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
            (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 46/51 (90%), Positives = 46/51 (90%), Gaps = 5/51 (9%)
 Frame = -3

Query: 283  EWNNDPDRKNRHGAGMVPYVLLRPS-----DGDPTDEKMVMEMGIPNSISI 146
            EWNNDPDRKNRHGAGMVPYVLLRPS     DGDPTDEKMVMEMGIPNSISI
Sbjct: 886  EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
            (LOX2:Hv:2)
          Length = 932

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 35/46 (76%), Positives = 39/46 (84%)
 Frame = -3

Query: 283  EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
            EWN D  R+NRHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI
Sbjct: 887  EWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932



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>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:3)
          Length = 896

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/44 (56%), Positives = 29/44 (65%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           NN+P+ KNR GAG+VPY LL+     P  E  V   GIPNSISI
Sbjct: 858 NNNPENKNRCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896



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>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)|
          Length = 899

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           N DP R+NR GAG++PY L+ PS G       +   G+PNS++I
Sbjct: 861 NADPSRRNRCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 283 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 146
           + N +   KNR+G   +PY+LL P+  D T EK   +  MGIPNSISI
Sbjct: 830 DMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGD-PTDEKMVMEMGIPNSISI 146
           N DP RKNR G    PY LL P+  D   D   +   GIPNSISI
Sbjct: 826 NKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870



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>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 146
           N+DP+ KNR+G    PY+LL P+  D       +   GIPNSISI
Sbjct: 818 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 23/44 (52%), Positives = 26/44 (59%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           N D  RKNR GAG++PY LL PS         V   G+PNSISI
Sbjct: 880 NADHGRKNRCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 146
           N D   KNR+G    PY+LL P+  D T     +   GIPNSISI
Sbjct: 822 NGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
            1.13.11.12)
          Length = 941

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277  NNDPDRKNRHGAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 146
            N D   KNR GAG++PY L++P SD   T       MGIPNS SI
Sbjct: 903  NKDRKLKNRCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941



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>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)|
          Length = 924

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = -3

Query: 277  NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
            N D   KNR GAG++PY L++     P  +  V  MGIPNS SI
Sbjct: 886  NKDRKLKNRCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           NND   +NRHG   +PY LL PS      ++ +   GIPNSISI
Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           NND   +NR+G   +PY LL PS      E+ +   GIPNSISI
Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPS-----SEEGLTCRGIPNSISI 866



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = -3

Query: 283 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           E N D   +NR+G   +PY LL PS      E+ +   GIPNSISI
Sbjct: 813 EKNKDETLRNRYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853



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>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)|
          Length = 896

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 21/38 (55%), Positives = 24/38 (63%)
 Frame = -3

Query: 259 KNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           KNR GAG+V Y LL+     PT E  V  MG+P SISI
Sbjct: 864 KNRAGAGVVKYELLK-----PTSEHGVTGMGVPYSISI 896



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>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 859

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 22/46 (47%), Positives = 25/46 (54%)
 Frame = -3

Query: 283 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           E N+D   KNR G   +PY LL PS      E  V   GIPNS+SI
Sbjct: 819 ERNDDETLKNRTGLVKMPYTLLFPS-----SEGGVTGRGIPNSVSI 859



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = -3

Query: 283 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           E NND   +NR G   +PY LL PS      ++ +   GIPNSISI
Sbjct: 817 ERNNDEKLRNRCGPVQMPYTLLLPS-----SKEGLTFRGIPNSISI 857



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           N+DP  +NR G   +PY LL  S      E+ +   GIPNSISI
Sbjct: 826 NSDPSLRNRTGPVQLPYTLLHRS-----SEEGLTFKGIPNSISI 864



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           NNDP   +R G   +PY LL PS      ++ +   GIPNSISI
Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPS-----SKEGLTFRGIPNSISI 864



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTD-EKMVMEMGIPNSISI 146
           N DP  KNR G    PY L+ P+  D     + +   GIPNSISI
Sbjct: 819 NKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277 NNDPDRK-NRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           NNDP  + NR G   +PY LL PS      E+ +   GIPNSISI
Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSS-----EEGLTFRGIPNSISI 839



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           N+    KNR G   VPY LL P     T E+ +   GIPNS+SI
Sbjct: 821 NSHKSWKNRSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           NND    NR G   +PY LL P+    T        GIPNSISI
Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSEGLTCR------GIPNSISI 865



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           N D   +NR+G   +PY +L P+     +++ +   GIPNSISI
Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPT----CEDEGLTFRGIPNSISI 862



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>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 861

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 146
           N D    NR G    PY LL P     T E  +   GIPNS+SI
Sbjct: 823 NGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861



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>KCNA4_BOVIN (Q05037) Potassium voltage-gated channel subfamily A member 4|
           (Voltage-gated potassium channel subunit Kv1.4) (BAK4)
          Length = 660

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = -2

Query: 266 RPEKPTRRRHGAVCAAQAVGR*SHGREDGDGDGHSQQHLHLSCLVC 129
           R  +  R  H    AA AV   +   E G G G SQ H H S   C
Sbjct: 26  RARERERLAHSRAAAAAAVAAATAAVEGGGGSGGSQHHHHPSRGAC 71



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>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)|
          Length = 741

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 277 NNDPDRKNRHGAGMVPYVLLRPS 209
           NND   +NR G   +PY LL PS
Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPS 731



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>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit|
           2 (ACDS complex epsilon subunit 2)
          Length = 170

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 82  WPGGGYNGNEHQIIIKGHDDIYI 14
           WPG   NGN   II+ GH   YI
Sbjct: 99  WPGLDGNGNYDTIILLGHKKYYI 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,287,440
Number of Sequences: 219361
Number of extensions: 853460
Number of successful extensions: 2223
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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