ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12g09 |
|---|---|
| Clone Library Name | barley_pub |
>YOJ3_CAEEL (P34626) Hypothetical protein ZK353.3| Length = 164 Score = 32.7 bits (73), Expect = 0.24 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 11/86 (12%) Frame = -3 Query: 234 DAIALLGPVSESLDNFPPD---WDNRFT-LSGVTKEPHVKPSPIESPLSRSRTVEEKP-I 70 D+ +LGP ++ D D +DN +S + P KPSP +E P I Sbjct: 72 DSQMMLGPPKKANDQSASDCSIYDNLVVPMSELGPTPGNKPSP--------NPIEGAPMI 123 Query: 69 KPSQFSISRGPDGS------MTPEAD 10 +P Q ++SR PD S MTPE D Sbjct: 124 RPPQDTVSRAPDNSIYDTLQMTPEVD 149
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 30.0 bits (66), Expect = 1.6 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%) Frame = -3 Query: 255 EDPCYDPDAIAL--LGPVS-------ESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESPL 103 ++P D +AIA+ +GP+ + +D P D DN+ ++ + +P + + P+ Sbjct: 1012 KEPHCDLEAIAVTGVGPLHMLPSTCLQKVDEQPEDADNQRNVTRMGSQPSDPSTTVHVPV 1071 Query: 102 SRSRTVEEKPIKPS-QFSISRGPDGSMTPEADRV 4 + + E P+ PS ++ +G EAD V Sbjct: 1072 TLTGPPGETPVVPSGNMNLEGQAEGKKEAEADDV 1105
>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein| B) (S-layer protein 1) Length = 1664 Score = 29.6 bits (65), Expect = 2.0 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = -3 Query: 261 RFEDPCYDPDAIA---LLGPVSESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESPLSRSR 91 RFED P AI + E++ + G +EP +P P E+P+ + Sbjct: 532 RFEDTTAMPGAIEGTYMFDWYGENIKGYSVVQPGEIVAEG--EEPTEEPVPTETPVDPTP 589 Query: 90 TVEEKPIKPSQFSISRGPDGSMTPEADR 7 TV E+P+ PS+ PD + E D+ Sbjct: 590 TVTEEPV-PSEL-----PDSYVIMELDK 611 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -3 Query: 144 KEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPEADR 7 +EP +P P E+P+ + TV E+P+ PS+ PD + E D+ Sbjct: 374 EEPTEEPVPTETPVDPTPTVTEEPV-PSEL-----PDSYVIMELDK 413
>HUS2_SCHPO (Q09811) ATP-dependent DNA helicase hus2/rqh1 (EC 3.6.1.-)| Length = 1328 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Frame = -3 Query: 180 DWDNRFTLSGVTKEPHV----KPSPI--ESPLSRSRTVEEKPIKPSQFS 52 D +NR +S +K + KP+PI E+P+S + E PIKP + S Sbjct: 168 DVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPIKPKELS 216
>MASS1_HUMAN (Q8WXG9) Monogenic audiogenic seizure susceptibility protein 1| homolog precursor (Very large G-protein coupled receptor 1) (Usher syndrome type-2C protein) (G-protein coupled receptor 98) Length = 6307 Score = 28.5 bits (62), Expect = 4.5 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -3 Query: 201 SLDNFPPDWDNRFTLSGVTKEPHVKPSP 118 +++ PPDW+ G P +KPSP Sbjct: 6206 AMEEVPPDWERASFQQGSQASPDLKPSP 6233
>ELF3_ARATH (O82804) EARLY FLOWERING 3 protein (Nematode-responsive protein)| Length = 695 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/74 (25%), Positives = 32/74 (43%) Frame = +2 Query: 5 TRSASGVMEPSGPLEIENCDGFIGFSSTVRDLDRGDSIGDGLTCGSFVTPLKVNLLSQSG 184 +R S PSGP I F F++ D + ++ +T + T V ++ G Sbjct: 596 SRQGSTGSSPSGPQGISGSKSFRPFAAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDG 655 Query: 185 GKLSRDSETGPSNA 226 G ++R + P NA Sbjct: 656 GGVTRVIKVVPHNA 669
>SYQ_RALSO (Q8Y199) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 237 PDAIALLGPVSESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESPLSRSRTVEEK 76 P ++A+L PV LDN P D++ + K+P + E PL+R +E + Sbjct: 367 PRSVAVLDPVKLILDNVPADFNEPCSAPVHPKQPEL--GRREFPLTRELWIERE 418
>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)| Length = 375 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = -3 Query: 162 TLSGVTKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPEADRV 4 TL G K+P P P P RS + +E +PS+ + S +DR+ Sbjct: 91 TLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQRKSLYESFVSSSDRL 143
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 28.1 bits (61), Expect = 5.9 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%) Frame = -3 Query: 147 TKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPD-------GSMTPEA 13 T P P P+ SPL + EE+P P S+ GP S+TPEA Sbjct: 1594 TPVPSSSPPPLSSPLPEAPQPEEEPSVPEAPSL--GPPSSSLELLASLTPEA 1643
>ZN407_HUMAN (Q9C0G0) Zinc finger protein 407 (Fragment)| Length = 1165 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = -3 Query: 174 DNRFTLSGVTKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDG 31 D+ FT + + +EP VK E PL SR P + Q I +G DG Sbjct: 748 DSPFTAAALAEEPLVK----EKPLRSSRRPAPPPEQVQQVIIFQGYDG 791
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 249 PCYDPDAIALLGPVSESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESP 106 P D ++ GP SES D + + + VT +P KP P SP Sbjct: 737 PASDSKIVSHPGPTSESKDPVQKKEEPKKAQTKVTPKPDTKPVPKGSP 784
>SSH1_MOUSE (Q76I79) Protein phosphatase Slingshot homolog 1 (EC 3.1.3.48) (EC| 3.1.3.16) (SSH-1L) (mSSH-1L) Length = 1042 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = -3 Query: 138 PHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPE 16 PHV SP+ SRSR E P+ S P GS P+ Sbjct: 687 PHVTSSPMAHASSRSRAPERPASGPANTSPFLLPAGSRKPD 727
>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)| (Ubiquitin-protein ligase 1) Length = 3684 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/74 (21%), Positives = 29/74 (39%) Frame = -3 Query: 225 ALLGPVSESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSIS 46 A+ PV + NF P D + G V+PSP++ + ++E + + Sbjct: 2536 AIAPPVDDPDSNFQPSVDVDMSSDGAEGNQSVQPSPLDGDNNELSSMEATENVRNDEQVE 2595 Query: 45 RGPDGSMTPEADRV 4 G PE + + Sbjct: 2596 EGSLDGRAPEVNAI 2609
>Y663_METJA (Q58077) Hypothetical protein MJ0663| Length = 494 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 47 EIENCDGFIGFSSTVRDLDRGD---SIGDGLTCGSFVTPLKVNLLSQS 181 ++ENC G +G ++ L D +IG L+ ++V ++ LLS++ Sbjct: 237 KLENCIGLVGRRGDLKSLLEADKIINIGSSLSYNTYVESVREKLLSKT 284
>YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1| Length = 2434 Score = 27.7 bits (60), Expect = 7.7 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = -3 Query: 210 VSESL--DNFPPDWDNRFTLSGVTKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGP 37 VSE + D FPPDW + VT ++KP S++R++++ P K +GP Sbjct: 1163 VSEKIAFDQFPPDWADDGIQILVTNPFYLKP----WYRSKTRSIQKDPKKEKDPKKEKGP 1218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,657,647 Number of Sequences: 219361 Number of extensions: 915767 Number of successful extensions: 2871 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2767 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2863 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
