ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12g09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 109 bits (55), Expect = 5e-21 Identities = 139/167 (83%) Strand = Plus / Minus Query: 92 cgtgatcttgacaggggagactcaattggtgacggcttaacatgtggttccttcgtgaca 151 ||||||||||| || ||||| || |||||||| ||||| |||||| |||||| |||| Sbjct: 646701 cgtgatcttgaaagaggagattcgattggtgaaggcttcgcatgtgtttccttggtgatg 646642 Query: 152 ccactcaaggtaaacctattatcccagtctggagggaagttatctagggattctgaaact 211 |||| || | |||| ||||| |||| |||| |||||||||||||| ||||||||| Sbjct: 646641 tcactagagatgaacccgctatccaagtcgagaggaaagttatctagggactctgaaact 646582 Query: 212 ggcccaagcaatgcaatcgcatctggatcatagcacgggtcctcaaa 258 ||||||||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct: 646581 ggcccaagcaacgcaattgcatcaggatcatagcatgggtcctcaaa 646535
>dbj|AK068644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J09, full insert sequence Length = 3185 Score = 109 bits (55), Expect = 5e-21 Identities = 139/167 (83%) Strand = Plus / Minus Query: 92 cgtgatcttgacaggggagactcaattggtgacggcttaacatgtggttccttcgtgaca 151 ||||||||||| || ||||| || |||||||| ||||| |||||| |||||| |||| Sbjct: 2201 cgtgatcttgaaagaggagattcgattggtgaaggcttcgcatgtgtttccttggtgatg 2142 Query: 152 ccactcaaggtaaacctattatcccagtctggagggaagttatctagggattctgaaact 211 |||| || | |||| ||||| |||| |||| |||||||||||||| ||||||||| Sbjct: 2141 tcactagagatgaacccgctatccaagtcgagaggaaagttatctagggactctgaaact 2082 Query: 212 ggcccaagcaatgcaatcgcatctggatcatagcacgggtcctcaaa 258 ||||||||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct: 2081 ggcccaagcaacgcaattgcatcaggatcatagcatgggtcctcaaa 2035
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 109 bits (55), Expect = 5e-21 Identities = 139/167 (83%) Strand = Plus / Minus Query: 92 cgtgatcttgacaggggagactcaattggtgacggcttaacatgtggttccttcgtgaca 151 ||||||||||| || ||||| || |||||||| ||||| |||||| |||||| |||| Sbjct: 646701 cgtgatcttgaaagaggagattcgattggtgaaggcttcgcatgtgtttccttggtgatg 646642 Query: 152 ccactcaaggtaaacctattatcccagtctggagggaagttatctagggattctgaaact 211 |||| || | |||| ||||| |||| |||| |||||||||||||| ||||||||| Sbjct: 646641 tcactagagatgaacccgctatccaagtcgagaggaaagttatctagggactctgaaact 646582 Query: 212 ggcccaagcaatgcaatcgcatctggatcatagcacgggtcctcaaa 258 ||||||||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct: 646581 ggcccaagcaacgcaattgcatcaggatcatagcatgggtcctcaaa 646535
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 109 bits (55), Expect = 5e-21 Identities = 139/167 (83%) Strand = Plus / Plus Query: 92 cgtgatcttgacaggggagactcaattggtgacggcttaacatgtggttccttcgtgaca 151 ||||||||||| || ||||| || |||||||| ||||| |||||| |||||| |||| Sbjct: 2142 cgtgatcttgaaagaggagattcgattggtgaaggcttcgcatgtgtttccttggtgatg 2201 Query: 152 ccactcaaggtaaacctattatcccagtctggagggaagttatctagggattctgaaact 211 |||| || | |||| ||||| |||| |||| |||||||||||||| ||||||||| Sbjct: 2202 tcactagagatgaacccgctatccaagtcgagaggaaagttatctagggactctgaaact 2261 Query: 212 ggcccaagcaatgcaatcgcatctggatcatagcacgggtcctcaaa 258 ||||||||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct: 2262 ggcccaagcaacgcaattgcatcaggatcatagcatgggtcctcaaa 2308
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 103 bits (52), Expect = 3e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 183 gagggaagttatctagggattctgaaactggcccaagcaatgcaatcgcatctggatcat 242 |||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 610861 gaggaaagttatctagggactctgaaactggcccaagcaacgcaattgcatcaggatcat 610802 Query: 243 agcacgggtcctcaaa 258 |||| ||||||||||| Sbjct: 610801 agcatgggtcctcaaa 610786
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 103 bits (52), Expect = 3e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 183 gagggaagttatctagggattctgaaactggcccaagcaatgcaatcgcatctggatcat 242 |||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 610861 gaggaaagttatctagggactctgaaactggcccaagcaacgcaattgcatcaggatcat 610802 Query: 243 agcacgggtcctcaaa 258 |||| ||||||||||| Sbjct: 610801 agcatgggtcctcaaa 610786
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 103 bits (52), Expect = 3e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 183 gagggaagttatctagggattctgaaactggcccaagcaatgcaatcgcatctggatcat 242 |||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 132111 gaggaaagttatctagggactctgaaactggcccaagcaacgcaattgcatcaggatcat 132170 Query: 243 agcacgggtcctcaaa 258 |||| ||||||||||| Sbjct: 132171 agcatgggtcctcaaa 132186
>ref|NM_115023.2| Arabidopsis thaliana unknown protein AT3G51640 mRNA, complete cds Length = 2668 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Minus Query: 91 ccgtgatcttgacaggggagactcaattggtgacggctt 129 ||||||||| |||| ||||||||||||||| || ||||| Sbjct: 1926 ccgtgatctagacaagggagactcaattggagatggctt 1888
>ref|NM_115024.2| Arabidopsis thaliana unknown protein AT3G51650 mRNA, complete cds Length = 2544 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Minus Query: 91 ccgtgatcttgacaggggagactcaattggtgacggctt 129 ||||||||| |||| ||||||||||||||| || ||||| Sbjct: 1926 ccgtgatctagacaagggagactcaattggagatggctt 1888
>emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, BAC clone T18N14 Length = 79867 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Minus Query: 91 ccgtgatcttgacaggggagactcaattggtgacggctt 129 ||||||||| |||| ||||||||||||||| || ||||| Sbjct: 42806 ccgtgatctagacaagggagactcaattggagatggctt 42768 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Minus Query: 91 ccgtgatcttgacaggggagactcaattggtgacggctt 129 ||||||||| |||| ||||||||||||||| || ||||| Sbjct: 37673 ccgtgatctagacaagggagactcaattggagatggctt 37635
>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete sequence Length = 238934 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 tccagttcttccaatactgctgttt 287 ||||||||| ||||||||||||||| Sbjct: 74940 tccagttctaccaatactgctgttt 74916
>ref|XM_426585.1| PREDICTED: Gallus gallus similar to fidgetin (LOC429028), mRNA Length = 2571 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 acgggtcctcaaacctctccagtt 269 ||||| |||||||||||||||||| Sbjct: 1004 acgggacctcaaacctctccagtt 1027
>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains pseudogene similar to part of a novel gene (KIAA1688), a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (SLC25A6) (ANT3) pseudogene and a CpG island, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tctggaaatagaaaactgtg 62 |||||||||||||||||||| Sbjct: 86719 tctggaaatagaaaactgtg 86700
>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence Length = 192565 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 47 gaaatagaaaactgtgatggttttatag 74 |||||||||||||| |||||||||||| Sbjct: 146275 gaaatagaaaactggaatggttttatag 146302 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,619,814 Number of Sequences: 3902068 Number of extensions: 2619814 Number of successful extensions: 49229 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49154 Number of HSP's gapped (non-prelim): 75 length of query: 302 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 280 effective length of database: 17,147,199,772 effective search space: 4801215936160 effective search space used: 4801215936160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
