ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SOAT2_HUMAN (O75908) Sterol O-acyltransferase 2 (EC 2.3.1.26) (C... 28 4.6
2SOAT2_CERAE (O77759) Sterol O-acyltransferase 2 (EC 2.3.1.26) (C... 28 4.6
3OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransfe... 28 4.6
4OST4_HUMAN (Q9Y661) Heparan sulfate glucosamine 3-O-sulfotransfe... 28 6.1

>SOAT2_HUMAN (O75908) Sterol O-acyltransferase 2 (EC 2.3.1.26) (Cholesterol|
           acyltransferase 2) (Acyl coenzyme A:cholesterol
           acyltransferase 2) (ACAT-2)
          Length = 522

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 147 LSYVRYRCFLHGQSCIIFFLPESRVPFS 64
           L  V Y CF+ G+ C+  F   SR PFS
Sbjct: 305 LGCVLYACFILGRLCVPVFANMSREPFS 332



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>SOAT2_CERAE (O77759) Sterol O-acyltransferase 2 (EC 2.3.1.26) (Cholesterol|
           acyltransferase 2) (Acyl coenzyme A:cholesterol
           acyltransferase 2) (ACAT-2)
          Length = 526

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 147 LSYVRYRCFLHGQSCIIFFLPESRVPFS 64
           L  V Y CF+ G+ C+  F   SR PFS
Sbjct: 309 LGCVLYACFILGRLCVPVFANMSREPFS 336



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>OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 6) (Heparan sulfate
           3-O-sulfotransferase 6) (3-OST-6)
          Length = 342

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 70  WYSGFWKEEYNTRLTMQEAPISNITKPAPPKMH 168
           WY G      + ++TM++ P   +T+ AP ++H
Sbjct: 136 WYRGLMPRTLDGQITMEKTPSYFVTQEAPRRIH 168



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>OST4_HUMAN (Q9Y661) Heparan sulfate glucosamine 3-O-sulfotransferase 4 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 4) (Heparan sulfate
           3-O-sulfotransferase 4) (h3-OST-4)
          Length = 456

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 67  EWYSGFWKEEYNTRLTMQEAPISNITKPAPPKMH 168
           EWY     +  + ++TM++ P   +T  AP ++H
Sbjct: 242 EWYRNVMPKTLDGQITMEKTPSYFVTNEAPKRIH 275


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,378,381
Number of Sequences: 219361
Number of extensions: 739702
Number of successful extensions: 1677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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