Clone Name | rbastl12g08 |
---|---|
Clone Library Name | barley_pub |
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6 Length = 213788 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 15 tttacaatttttaattaagcaaat 38 |||||||||||||||||||||||| Sbjct: 18590 tttacaatttttaattaagcaaat 18613
>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43 Length = 198226 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 15 tttacaatttttaattaagcaaat 38 |||||||||||||||||||||||| Sbjct: 189744 tttacaatttttaattaagcaaat 189767
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Plus Query: 26 taattaagcaaatgaaaaaggca 48 ||||||||||||||||||||||| Sbjct: 326135 taattaagcaaatgaaaaaggca 326157
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Plus Query: 26 taattaagcaaatgaaaaaggca 48 ||||||||||||||||||||||| Sbjct: 322874 taattaagcaaatgaaaaaggca 322896
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Plus Query: 26 taattaagcaaatgaaaaaggca 48 ||||||||||||||||||||||| Sbjct: 346142 taattaagcaaatgaaaaaggca 346164
>dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-701H16, complete sequence Length = 173709 Score = 46.1 bits (23), Expect = 0.059 Identities = 26/27 (96%) Strand = Plus / Minus Query: 82 ttctggaaggaagaatataatacaaga 108 |||||||| |||||||||||||||||| Sbjct: 23565 ttctggaatgaagaatataatacaaga 23539
>dbj|AP005131.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-53B2, complete sequence Length = 162119 Score = 46.1 bits (23), Expect = 0.059 Identities = 26/27 (96%) Strand = Plus / Minus Query: 82 ttctggaaggaagaatataatacaaga 108 |||||||| |||||||||||||||||| Sbjct: 114612 ttctggaatgaagaatataatacaaga 114586
>emb|AL133319.24| Human DNA sequence from clone RP11-394G3 on chromosome 6 Contains the 5' end of the PDE7B gene for phosphodiesterase 7B and a novel gene, complete sequence Length = 150072 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ttaattaagcaaatgaaaaagg 46 |||||||||||||||||||||| Sbjct: 7394 ttaattaagcaaatgaaaaagg 7373
>emb|CT573032.5| Mouse DNA sequence from clone RP24-315C3 on chromosome 17, complete sequence Length = 40018 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 ttaattaagcaaatgaaaaagg 46 |||||||||||||||||||||| Sbjct: 20726 ttaattaagcaaatgaaaaagg 20747
>gb|AC151272.2| Mus musculus BAC clone RP24-208G22 from 17, complete sequence Length = 148109 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ttaattaagcaaatgaaaaagg 46 |||||||||||||||||||||| Sbjct: 37981 ttaattaagcaaatgaaaaagg 37960
>emb|BX284672.11| Zebrafish DNA sequence from clone DKEY-88N24 in linkage group 20 Contains give genes for novel proteins with Lectin C-type domains, the gene for a novel protein similar to vertebrate NDRG (N-myc downregulated gene family) member 2 (NDGR2), two novel genes and two CpG islands, complete sequence Length = 149982 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 caacatgtatttacaattttt 26 ||||||||||||||||||||| Sbjct: 46988 caacatgtatttacaattttt 46968
>gb|AC145910.2| Gallus gallus BAC clone CH261-44O1 from chromosome unknown, complete sequence Length = 213878 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aagacaacatgtatttacaat 22 ||||||||||||||||||||| Sbjct: 178101 aagacaacatgtatttacaat 178121
>gb|AC129184.3| Mus musculus BAC clone RP23-358F24 from 5, complete sequence Length = 203369 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 catgtatttacaatttttaat 29 ||||||||||||||||||||| Sbjct: 86025 catgtatttacaatttttaat 86045
>gb|AC159929.3| Callicebus moloch clone LB5-284A7, complete sequence Length = 43141 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 atgtatttacaatttttaat 29 |||||||||||||||||||| Sbjct: 23514 atgtatttacaatttttaat 23533
>gb|AC144709.2| Danio rerio clone CH211-204P11, complete sequence Length = 157229 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgtatttacaatttttaatt 30 |||||||||||||||||||| Sbjct: 29378 tgtatttacaatttttaatt 29397
>gb|AC116473.13| Mus musculus chromosome 8, clone RP23-385E22, complete sequence Length = 186155 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ttaagcaaatgaaaaaggca 48 |||||||||||||||||||| Sbjct: 63988 ttaagcaaatgaaaaaggca 63969
>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence Length = 192662 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 15 tttacaatttttaattaagcaaatgaaaaagg 46 ||||||||| ||||||||||||||| ||||| Sbjct: 130703 tttacaattcataattaagcaaatgagaaagg 130672
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 227 aagagtaatcaggttcatcatctgcatcaacaaaca 262 |||| |||| ||||| |||||| ||||||||||||| Sbjct: 4289106 aagaataattaggttgatcatcagcatcaacaaaca 4289071
>gb|AC115799.10| Mus musculus chromosome 6, clone RP23-406G9, complete sequence Length = 227078 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ttaagcaaatgaaaaaggca 48 |||||||||||||||||||| Sbjct: 194194 ttaagcaaatgaaaaaggca 194175
>emb|CR759953.10| Zebrafish DNA sequence from clone DKEY-68D15 in linkage group 7, complete sequence Length = 162332 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 catgtatttacaatttttaa 28 |||||||||||||||||||| Sbjct: 89688 catgtatttacaatttttaa 89669
>emb|CR853300.3| Wallaby DNA sequence from clone MEKBa-585D22, complete sequence Length = 165531 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gcaaatgaaaaaggcacata 52 |||||||||||||||||||| Sbjct: 90094 gcaaatgaaaaaggcacata 90113
>emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in linkage group 8, complete sequence Length = 135277 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 catgtatttacaatttttaa 28 |||||||||||||||||||| Sbjct: 14360 catgtatttacaatttttaa 14341
>emb|AL391335.32| Human DNA sequence from clone RP11-404E16 on chromosome 1 Contains the 5' end of the SNX27 gene for sorting nexin family member 27 and three CpG islands, complete sequence Length = 82901 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aattaagcaaatgaaaaagg 46 |||||||||||||||||||| Sbjct: 72701 aattaagcaaatgaaaaagg 72682
>emb|AL365210.13| Human DNA sequence from clone RP11-398H15 on chromosome 10, complete sequence Length = 30749 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 caaatgaaaaaggcacatac 53 |||||||||||||||||||| Sbjct: 22712 caaatgaaaaaggcacatac 22731
>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence Length = 316613 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 aggcacatacttgaaacatt 63 |||||||||||||||||||| Sbjct: 111061 aggcacatacttgaaacatt 111080
>gb|AC119675.2| Homo sapiens chromosome 1 clone RP4-731G4, complete sequence Length = 138939 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 acaatttttaattaagcaaatgaa 41 |||||||||||||||| ||||||| Sbjct: 62583 acaatttttaattaagaaaatgaa 62560
>gb|AC009370.7| Drosophila melanogaster 3L BAC RP98-35F4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174919 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 aatttttaattaagcaaatg 39 |||||||||||||||||||| Sbjct: 97651 aatttttaattaagcaaatg 97632
>gb|AC024946.13| Homo sapiens chromosome 10 clone RP11-138M8, complete sequence Length = 155580 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aagcaaatgaaaaaggcaca 50 |||||||||||||||||||| Sbjct: 68650 aagcaaatgaaaaaggcaca 68669
>gb|AC024597.8| Homo sapiens chromosome 10 clone RP11-120C12, complete sequence Length = 155580 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aagcaaatgaaaaaggcaca 50 |||||||||||||||||||| Sbjct: 86931 aagcaaatgaaaaaggcaca 86912
>gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chromosome unknown, complete sequence Length = 227737 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 13 tatttacaatttttaattaagcaaatgaaaaa 44 |||||||||||||||| ||| || |||||||| Sbjct: 25675 tatttacaatttttaaataatcatatgaaaaa 25706
>gb|AC155824.3| Mus musculus BAC clone RP23-136L1 from chromosome 8, complete sequence Length = 220437 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ttaagcaaatgaaaaaggca 48 |||||||||||||||||||| Sbjct: 55370 ttaagcaaatgaaaaaggca 55389
>emb|BX572622.13| Zebrafish DNA sequence from clone CH211-150O20 in linkage group 19, complete sequence Length = 188940 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtatttacaatttttaatt 30 |||||||||||||||||||| Sbjct: 95247 tgtatttacaatttttaatt 95228
>gb|AC015468.5|AC015468 Homo sapiens chromosome 8, clone RP11-369E15, complete sequence Length = 189662 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ttaattaagcaaatgaaaaa 44 |||||||||||||||||||| Sbjct: 96108 ttaattaagcaaatgaaaaa 96127
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 227 aagagtaatcaggttcatcatctgcatcaacaaaca 262 |||| |||| ||||| |||||| ||||||||||||| Sbjct: 4289221 aagaataattaggttgatcatcagcatcaacaaaca 4289186
>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete sequence Length = 197149 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 15 tttacaatttttaattaagcaaatgaaaaagg 46 ||||||||| ||||||||||||||| ||||| Sbjct: 43978 tttacaattcataattaagcaaatgagaaagg 43947
>gb|AC151713.4| Mus musculus BAC clone RP24-100K9 from chromosome 8, complete sequence Length = 199295 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acattactgaatggtactct 78 |||||||||||||||||||| Sbjct: 145363 acattactgaatggtactct 145382
>emb|BX914202.18| Zebrafish DNA sequence from clone CH211-243P18 in linkage group 19, complete sequence Length = 73207 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtatttacaatttttaatt 30 |||||||||||||||||||| Sbjct: 68675 tgtatttacaatttttaatt 68656
>gb|AC163767.4| Pan troglodytes BAC clone CH251-162B13 from chromosome unknown, complete sequence Length = 193117 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 13 tatttacaatttttaattaagcaaatgaaaaa 44 |||||||||||||||| ||| || |||||||| Sbjct: 119637 tatttacaatttttaaataatcatatgaaaaa 119606
>gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65 of 83 of the complete sequence Length = 275124 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 aatttttaattaagcaaatg 39 |||||||||||||||||||| Sbjct: 141086 aatttttaattaagcaaatg 141067
>gb|AC105989.14| Mus musculus chromosome 8, clone RP24-95N3, complete sequence Length = 194387 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 acattactgaatggtactct 78 |||||||||||||||||||| Sbjct: 172174 acattactgaatggtactct 172155
>emb|AL732291.11| Mouse DNA sequence from clone RP23-48I14 on chromosome X, complete sequence Length = 210192 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 aacatgtatttacaatttttaatt 30 |||||||| ||||||||||||||| Sbjct: 54578 aacatgtagttacaatttttaatt 54555
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 40.1 bits (20), Expect = 3.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 227 aagagtaatcaggttcatcatctgcatcaacaaaca 262 |||| |||| ||||| |||||| ||||||||||||| Sbjct: 117721 aagaataattaggttgatcatcagcatcaacaaaca 117686
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 atgtatttacaatttttaat 29 |||||||||||||||||||| Sbjct: 429041 atgtatttacaatttttaat 429060 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,642,782 Number of Sequences: 3902068 Number of extensions: 3642782 Number of successful extensions: 82639 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82489 Number of HSP's gapped (non-prelim): 150 length of query: 278 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 256 effective length of database: 17,147,199,772 effective search space: 4389683141632 effective search space used: 4389683141632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)