ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor... 31 0.92
2YCF2_VICFA (P15821) Protein ycf2 (Fragment) 28 4.5

>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)|
            (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1)
          Length = 2688

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 280  TSLPLYVNCLCWRPDAICTEVISSKSHQYFAQEKQLSQILLTATRG*SRRLQVTP 116
            T LPL V+    +PDA  T  +SS     FA + QL     T+ +G S  L+ +P
Sbjct: 1513 TPLPLPVSAQGGKPDAAPTACVSSTGEGSFAPKYQLQCQAFTSDQGCSAPLRSSP 1567



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>YCF2_VICFA (P15821) Protein ycf2 (Fragment)|
          Length = 121

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 205 SHQYFAQEKQLSQILLTATRG*SRRLQVTPWKLVQRVW 92
           SHQ F+ ++++S+ILLT+      + Q   WK + + W
Sbjct: 8   SHQEFSPDEEMSRILLTS------QTQKIDWKYLNKPW 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,719,555
Number of Sequences: 219361
Number of extensions: 846053
Number of successful extensions: 2014
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2014
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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