ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 48 0.016
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
3dbj|AK065413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
4gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, com... 42 0.99
5emb|AJ628403.1| Micoureus demerarae partial ttr gene for transth... 40 3.9
6emb|AJ628397.1| Marmosa murina partial ttr gene for transthyreti... 40 3.9
7emb|AJ628396.1| Marmosa mexicana partial ttr gene for transthyre... 40 3.9
8emb|AJ628395.1| Marmosa lepida partial ttr gene for transthyreti... 40 3.9
9gb|AC025586.4| Genomic sequence for Mus musculus, clone RP23-320... 40 3.9
10gb|AC153586.7| Mus musculus 6 BAC RP23-88E13 (Roswell Park Cance... 40 3.9
11gb|AC087832.2|AC087832 Homo sapiens chromosome 15 clone RP11-64I... 40 3.9
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
13gb|AC068712.6|AC068712 Homo sapiens chromosome 15 clone CTD-3203... 40 3.9
14dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
15gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, co... 40 3.9
16emb|AL662912.14| Mouse DNA sequence from clone RP23-408D5 on chr... 40 3.9 
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 64/74 (86%), Gaps = 5/74 (6%)
 Strand = Plus / Plus

                                                                         
Query: 175   actgtttctcctgtgcaaaatattggtggcttttacttgagattacttctgtacaaatgg 234
             ||||||||||||||||||||| |   ||||| ||| ||||| || | ||||||| |||||
Sbjct: 29996 actgtttctcctgtgcaaaatct---tggctcttagttgaggtt-cctctgtac-aatgg 30050

                           
Query: 235   catcaggacgccaa 248
             ||||||||||||||
Sbjct: 30051 catcaggacgccaa 30064
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 64/74 (86%), Gaps = 5/74 (6%)
 Strand = Plus / Plus

                                                                            
Query: 175      actgtttctcctgtgcaaaatattggtggcttttacttgagattacttctgtacaaatgg 234
                ||||||||||||||||||||| |   ||||| ||| ||||| || | ||||||| |||||
Sbjct: 28022770 actgtttctcctgtgcaaaatct---tggctcttagttgaggtt-cctctgtac-aatgg 28022824

                              
Query: 235      catcaggacgccaa 248
                ||||||||||||||
Sbjct: 28022825 catcaggacgccaa 28022838
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>dbj|AK065413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021I12, full
            insert sequence
          Length = 3799

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 64/74 (86%), Gaps = 5/74 (6%)
 Strand = Plus / Minus

                                                                        
Query: 175  actgtttctcctgtgcaaaatattggtggcttttacttgagattacttctgtacaaatgg 234
            ||||||||||||||||||||| |   ||||| ||| ||||| || | ||||||| |||||
Sbjct: 3556 actgtttctcctgtgcaaaatct---tggctcttagttgaggtt-cctctgtac-aatgg 3502

                          
Query: 235  catcaggacgccaa 248
            ||||||||||||||
Sbjct: 3501 catcaggacgccaa 3488
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>gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, complete sequence
          Length = 220467

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   atctggctcaactgtttctcc 185
             |||||||||||||||||||||
Sbjct: 49259 atctggctcaactgtttctcc 49239
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>emb|AJ628403.1| Micoureus demerarae partial ttr gene for transthyretin, intron 1
          Length = 1634

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cttctgtacaaatggcatca 239
            ||||||||||||||||||||
Sbjct: 1149 cttctgtacaaatggcatca 1130
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>emb|AJ628397.1| Marmosa murina partial ttr gene for transthyretin, intron 1
          Length = 1634

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cttctgtacaaatggcatca 239
            ||||||||||||||||||||
Sbjct: 1148 cttctgtacaaatggcatca 1129
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>emb|AJ628396.1| Marmosa mexicana partial ttr gene for transthyretin, intron 1
          Length = 1641

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cttctgtacaaatggcatca 239
            ||||||||||||||||||||
Sbjct: 1154 cttctgtacaaatggcatca 1135
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>emb|AJ628395.1| Marmosa lepida partial ttr gene for transthyretin, intron 1
          Length = 1633

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  cttctgtacaaatggcatca 239
            ||||||||||||||||||||
Sbjct: 1157 cttctgtacaaatggcatca 1138
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>gb|AC025586.4| Genomic sequence for Mus musculus, clone RP23-320C8, complete sequence
          Length = 185386

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aagaatctggctcaactgtt 180
              ||||||||||||||||||||
Sbjct: 149199 aagaatctggctcaactgtt 149218
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>gb|AC153586.7| Mus musculus 6 BAC RP23-88E13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 188553

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     tactctttgtacgagtttccatgg 118
              ||||||||||| ||||||||||||
Sbjct: 181839 tactctttgtaagagtttccatgg 181816
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>gb|AC087832.2|AC087832 Homo sapiens chromosome 15 clone RP11-64I7 map 15q21.3, complete
             sequence
          Length = 157812

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tttctcctgtgcaaaatatt 198
             ||||||||||||||||||||
Sbjct: 13762 tttctcctgtgcaaaatatt 13743
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 179      tttctcctgtgcaaaatatt 198
                ||||||||||||||||||||
Sbjct: 19707174 tttctcctgtgcaaaatatt 19707193
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>gb|AC068712.6|AC068712 Homo sapiens chromosome 15 clone CTD-3203H14 map 15q21.3, complete
              sequence
          Length = 176645

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tttctcctgtgcaaaatatt 198
              ||||||||||||||||||||
Sbjct: 171050 tttctcctgtgcaaaatatt 171031
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0007M04
          Length = 176293

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   tttctcctgtgcaaaatatt 198
             ||||||||||||||||||||
Sbjct: 36125 tttctcctgtgcaaaatatt 36144
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>gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, complete sequence
          Length = 212218

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    tactctttgtacgagtttccatgg 118
             ||||||||||| ||||||||||||
Sbjct: 29290 tactctttgtaagagtttccatgg 29267
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>emb|AL662912.14| Mouse DNA sequence from clone RP23-408D5 on chromosome 11, complete
             sequence
          Length = 75971

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   aagaatctggctcaactgtt 180
             ||||||||||||||||||||
Sbjct: 30491 aagaatctggctcaactgtt 30510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,590,906
Number of Sequences: 3902068
Number of extensions: 2590906
Number of successful extensions: 43700
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43659
Number of HSP's gapped (non-prelim): 41
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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