ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEG2_RAT (Q9Z144) Galectin-2 28 4.5
2PHR_BUCBP (Q89AJ9) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.... 28 7.8
3CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite ... 28 7.8
4SPEB1_SYNY3 (P72703) Agmatinase 1 (EC 3.5.3.11) (Agmatine ureohy... 28 7.8

>LEG2_RAT (Q9Z144) Galectin-2|
          Length = 130

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 3   ERSNVLNITAEVSIRGQYKGTVHNHLCSFKSNLKPQKQTL 122
           E+  V N+  +  +  + KG +HN + SF  NL   K+TL
Sbjct: 3   EKFEVTNLNMKSGMSLKIKGKIHNDVNSFTINLGQGKETL 42



to top

>PHR_BUCBP (Q89AJ9) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 478

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +1

Query: 61  ELSTI-TYAVSKAISNHKNK------P*PLVKYVKHNSRKLYFIIKHVCLSNKV 201
           ELS + TY +     N+K        P P++ Y  H+ +K   + KH   SNK+
Sbjct: 426 ELSNVSTYNIHNPCDNNKTNKIHSKYPQPIINYY-HSKKKTLLVFKHAKCSNKL 478



to top

>CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 430

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 285 NHLTPGLVSALTTYHSGHLTRSCLPSSTHLVRQTDMFDD 169
           ++ +PG+ + L  YH G L+ S  PS   L R  D+  D
Sbjct: 187 SNYSPGMSNDLAAYHQGGLSNSSSPSG--LARPMDLLAD 223



to top

>SPEB1_SYNY3 (P72703) Agmatinase 1 (EC 3.5.3.11) (Agmatine ureohydrolase 1) (AUH|
           1)
          Length = 306

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 3   ERSNVLNITAEVSIRGQYKGTVHNHLCSFKSNLKPQKQTL--ATSQICK 143
           E   V+ I A   +R +++G+ HNH C  +  L+    TL  A   IC+
Sbjct: 137 EPFTVVQIDAHGDMRDKFEGSCHNHACVMRRVLELGLPTLPIAIRAICQ 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,072,802
Number of Sequences: 219361
Number of extensions: 605644
Number of successful extensions: 1620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top