ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STE3_YEAST (P06783) Pheromone a factor receptor 30 1.2
2SCKP2_TITSE (P0C175) Peptide TsPep2 precursor 28 4.7

>STE3_YEAST (P06783) Pheromone a factor receptor|
          Length = 470

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 46  KIFNYCLSRFSSALNLLTAAWRTTVLF 126
           ++F Y ++R++   NLL+  W TTVL+
Sbjct: 135 QVFRYGIARYNGCQNLLSPTWITTVLY 161



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>SCKP2_TITSE (P0C175) Peptide TsPep2 precursor|
          Length = 68

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 177 IVKQSSIAAFSPLQSVVKQNGCTPSCC 97
           +V  + IA FS +++ VK  GC   CC
Sbjct: 12  LVLSAMIATFSEVEATVKCGGCNRKCC 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,075,192
Number of Sequences: 219361
Number of extensions: 541238
Number of successful extensions: 922
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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