ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12g03 |
|---|---|
| Clone Library Name | barley_pub |
>SYGB_BUCAI (P57235) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 690 Score = 32.7 bits (73), Expect = 0.23 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Frame = +2 Query: 95 KRISNLLAASKQKWN-----SCSMSREKLESFSDLEGLQNISSLIILVQRHQYVL---QT 250 KRISN+LA K+K N + +E++ F+++E N + + L +++ +L ++ Sbjct: 585 KRISNILAKEKEKINGDINKKLMIEKEEIILFNNIEEFDNYTKNLFLEKKYNDILIKIKS 644 Query: 251 TRQPTYLFF 277 P Y FF Sbjct: 645 FENPIYNFF 653
>LRC46_MACFA (Q4R747) Leucine-rich repeat-containing protein 46| Length = 321 Score = 30.8 bits (68), Expect = 0.89 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = +2 Query: 80 TFP*TKRISNLLAASKQKWNSCSMSREKLESFSDLEGLQNISSLIILVQRHQYVLQTTRQ 259 TFP + +S + + + + + RE + + +LEGL+N+ SL + + Q + Sbjct: 28 TFPEDEELSEKMFHTLDELQTVRLDREGITTIRNLEGLKNLHSLYLQGNKIQQIENLACV 87 Query: 260 PTYLFFTNA*N 292 P+ F + A N Sbjct: 88 PSLRFLSLAGN 98
>LRC46_HUMAN (Q96FV0) Leucine-rich repeat-containing protein 46| Length = 321 Score = 30.8 bits (68), Expect = 0.89 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +2 Query: 80 TFP*TKRISNLLAASKQKWNSCSMSREKLESFSDLEGLQNISSLIILVQRHQYVLQTTRQ 259 TFP +S + + + + + RE + + +LEGLQN+ SL + + Q + Sbjct: 28 TFPEDGELSEKMFHTLDELQTVRLDREGITTIRNLEGLQNLHSLYLQGNKIQQIENLACI 87 Query: 260 PTYLFFTNA*N 292 P+ F + A N Sbjct: 88 PSLRFLSLAGN 98
>H41_BLEJA (P80737) Histone H4-1 (Fragment)| Length = 97 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%) Frame = -2 Query: 295 HISGVSEEEIRGLARR--LKNILVALNEYDKARNILKTF 185 +I G+++ IR LARR +K L L YD+ RN+LK F Sbjct: 27 NIQGITKPAIRRLARRGGVKRTLSGL-VYDETRNVLKVF 64
>RAD50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase| Length = 864 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%) Frame = -2 Query: 277 EEEIRGLARRLKNILVALNEYDKARN----ILKTFQIRE 173 E+EI+ L +R+K+I +EY+K RN + T +I+E Sbjct: 210 EDEIKNLEKRIKDIKDQFDEYEKKRNQYLKLTTTLKIKE 248
>MINC_BACCR (Q817T7) Probable septum site-determining protein minC| Length = 228 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -2 Query: 325 LELSNKLKSRHISGVSEEEIRGLARRLKNILVALNEYD 212 +E+ K+ +R+++ V +EEIR L R KN++V E D Sbjct: 52 IEVHVKVGNRYLTEVQQEEIRTLIRNKKNLVVDSIESD 89
>MINC_BACC1 (P62208) Probable septum site-determining protein minC| Length = 228 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -2 Query: 325 LELSNKLKSRHISGVSEEEIRGLARRLKNILVALNEYD 212 +E+ K+ +R+++ V +EEIR L R KN++V E D Sbjct: 52 IEVHVKVGNRYLTEVQQEEIRTLIRNKKNLVVDSIESD 89
>MINC_BACAN (Q81LE1) Probable septum site-determining protein minC| Length = 228 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -2 Query: 325 LELSNKLKSRHISGVSEEEIRGLARRLKNILVALNEYD 212 +E+ K+ +R+++ V +EEIR L R KN++V E D Sbjct: 52 IEVHVKVGNRYLTEVQQEEIRTLIRNKKNLVVDSIESD 89
>ENGC_UREPA (Q9PQS5) Probable GTPase engC (EC 3.6.1.-)| Length = 302 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -2 Query: 256 ARRLKNILVALNEYDKARNILK 191 AR +KN+L+ L++YD A N LK Sbjct: 104 ARNIKNVLIGLSKYDLANNHLK 125
>SRD51_CAEEL (Q19473) Serpentine receptor class delta-51 (Protein srd-51)| Length = 336 Score = 29.6 bits (65), Expect = 2.0 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%) Frame = +3 Query: 102 YQTCLPPPNKNGILVLCQ------GKN--------*RASLIWKVFKIFLALSYSFSATNM 239 + C P NK+ + V C GKN + S++ F I L+ Y + + Sbjct: 65 FAQCRPVANKSTLAVFCHGPCKYFGKNTCFVTFAVVQCSVVAASFSILLSFYYRYRLLKV 124 Query: 240 FFKRR---ASPRISSSLTPEMCLLLSLFDNSN 326 FK++ A+ I S P + LL L +SN Sbjct: 125 NFKKKHKHATTFIIFSFFPTVMLLFQLLTDSN 156
>H4_ENTHI (P40287) Histone H4| Length = 118 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = -2 Query: 319 LSNKLKSRHISGVSEEEIRGLARR--LKNILVALNEYDKARNILKTF 185 + K + + G+++ IR LARR +K I A+ YD+ RN+LK F Sbjct: 34 IRTKTQQDALKGITKPAIRRLARRGGVKRINGAV--YDETRNVLKQF 78
>RADB_METTH (O27728) DNA repair and recombination protein radB| Length = 234 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 183 KSEKLSSFSLDIEQEFHFCLEAASRFDILLVHGNVVMS 70 K SSF+LD+ ++ L+ A RFD+ V N + S Sbjct: 134 KEGNASSFNLDLGRQMFLLLQMARRFDLAAVITNQIYS 171
>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (Dead eye protein) Length = 820 Score = 28.5 bits (62), Expect = 4.4 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = -2 Query: 325 LELSNKLKSRHISGVSEEEIRGLARRLKNILVALNEYDKARNI 197 LEL NKL S I+ VSE + RLKN+ VA+ E +A + Sbjct: 640 LELMNKLLSPVIAQVSEPQSN--KERLKNMAVAIAERYRANGV 680
>CLPB_TREDE (Q73K92) Chaperone clpB| Length = 859 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = -2 Query: 313 NKLKSRHISGVSEEEIRGLARRLKNILVALNEYDKARNIL 194 N+L+ HI + + ++R +A RL+ + L DKA++ L Sbjct: 765 NRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSDKAKDFL 804
>H42_BLEJA (P90516) Histone H4 (Fragment)| Length = 89 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Frame = -2 Query: 286 GVSEEEIRGLARR--LKNILVALNEYDKARNILKTF 185 G+++ IR LARR +K L L YD+ RN+LK F Sbjct: 22 GITKPAIRRLARRGGVKRTLSGL-VYDETRNVLKVF 56
>IL22_MOUSE (Q9JJY9) Interleukin-22 precursor (IL-22) (IL-10-related| T-cell-derived-inducible factor) (IL-TIF) (IL-TIF alpha) (Interleukin-22a) (IL-22a) Length = 179 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 322 ELSNKLKSRHISGVSEEEIRGLARRLKNILVALNEYDKARNI 197 +LSN+L S HISG ++ I+ RRLK + L E + + I Sbjct: 124 KLSNQLSSCHISG-DDQNIQKNVRRLKETVKKLGESGEIKAI 164
>IL22B_MOUSE (Q9JJY8) Interleukin-22b precursor (IL-22b) (IL-10-related| T-cell-derived-inducible factor beta) (IL-TIFb) (IL-TIF beta) Length = 179 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 322 ELSNKLKSRHISGVSEEEIRGLARRLKNILVALNEYDKARNI 197 +LSN+L S HISG ++ I+ RRLK + L E + + I Sbjct: 124 KLSNQLSSCHISG-DDQNIQKNVRRLKETVKKLGESGEIKAI 164
>YOS1_SCHPO (P87319) Hypothetical protein C21C3.01c in chromosome II| Length = 3011 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -3 Query: 183 KSEKLSSFSLDIEQ-EFHFCLEAASRFDILLVHGNV 79 K+ K S FS +I + EFH + ++S D+L+ NV Sbjct: 1230 KNSKKSIFSCEITKVEFHTAVPSSSHHDVLMEENNV 1265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,569,329 Number of Sequences: 219361 Number of extensions: 853002 Number of successful extensions: 2083 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2058 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2083 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
