ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12g03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470443.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2995 Score = 101 bits (51), Expect = 1e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 ||||||||||| || || |||||||||||| |||||| |||||||| || ||||| | Sbjct: 2861 gcttctctgatctgaaaagtcttcaaaatagctctagctttatcatattcattcagttct 2802 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 |||||||||| ||||||||||| |||||||||||| ||||||| ||||| | |||||| Sbjct: 2801 accaatatgtctttcaaacgacgagccagcccacgtgtctcttcctcacttatgcctgac 2742 Query: 291 atgtgtc 297 ||||||| Sbjct: 2741 atgtgtc 2735
>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence Length = 166005 Score = 101 bits (51), Expect = 1e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 ||||||||||| || || |||||||||||| |||||| |||||||| || ||||| | Sbjct: 59202 gcttctctgatctgaaaagtcttcaaaatagctctagctttatcatattcattcagttct 59261 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 |||||||||| ||||||||||| |||||||||||| ||||||| ||||| | |||||| Sbjct: 59262 accaatatgtctttcaaacgacgagccagcccacgtgtctcttcctcacttatgcctgac 59321 Query: 291 atgtgtc 297 ||||||| Sbjct: 59322 atgtgtc 59328
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 1e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 ||||||||||| || || |||||||||||| |||||| |||||||| || ||||| | Sbjct: 35661424 gcttctctgatctgaaaagtcttcaaaatagctctagctttatcatattcattcagttct 35661483 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 |||||||||| ||||||||||| |||||||||||| ||||||| ||||| | |||||| Sbjct: 35661484 accaatatgtctttcaaacgacgagccagcccacgtgtctcttcctcacttatgcctgac 35661543 Query: 291 atgtgtc 297 ||||||| Sbjct: 35661544 atgtgtc 35661550
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 1e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 ||||||||||| || || |||||||||||| |||||| |||||||| || ||||| | Sbjct: 35751497 gcttctctgatctgaaaagtcttcaaaatagctctagctttatcatattcattcagttct 35751556 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 |||||||||| ||||||||||| |||||||||||| ||||||| ||||| | |||||| Sbjct: 35751557 accaatatgtctttcaaacgacgagccagcccacgtgtctcttcctcacttatgcctgac 35751616 Query: 291 atgtgtc 297 ||||||| Sbjct: 35751617 atgtgtc 35751623
>dbj|AK069032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004O11, full insert sequence Length = 3216 Score = 101 bits (51), Expect = 1e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 ||||||||||| || || |||||||||||| |||||| |||||||| || ||||| | Sbjct: 2994 gcttctctgatctgaaaagtcttcaaaatagctctagctttatcatattcattcagttct 2935 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 |||||||||| ||||||||||| |||||||||||| ||||||| ||||| | |||||| Sbjct: 2934 accaatatgtctttcaaacgacgagccagcccacgtgtctcttcctcacttatgcctgac 2875 Query: 291 atgtgtc 297 ||||||| Sbjct: 2874 atgtgtc 2868
>gb|DQ430328.1| Sorghum propinquum locus pSB1914 genomic sequence Length = 730 Score = 63.9 bits (32), Expect = 3e-07 Identities = 116/144 (80%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||||||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcatactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||||||| ||||| ||||| || || |||| | ||||||| || |||| |||||| Sbjct: 564 accaatatgtttttcaatcgacgagctagaccacatgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430327.1| Sorghum bicolor voucher PI585454 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430326.1| Sorghum bicolor voucher PI267539 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430325.1| Sorghum bicolor voucher PI267408 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430324.1| Sorghum bicolor voucher PI221607 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430323.1| Sorghum bicolor voucher PI152702 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430322.1| Sorghum bicolor voucher NSL92371 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430321.1| Sorghum bicolor voucher NSL87902 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430320.1| Sorghum bicolor voucher NSL87666 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430319.1| Sorghum bicolor voucher NSL77217 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430318.1| Sorghum bicolor voucher NSL77034 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430317.1| Sorghum bicolor voucher NSL56174 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430316.1| Sorghum bicolor voucher NSL56003 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430315.1| Sorghum bicolor voucher NSL55243 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430314.1| Sorghum bicolor voucher NSL51365 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430313.1| Sorghum bicolor voucher NSL51030 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430312.1| Sorghum bicolor voucher NSL50875 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>gb|DQ430311.1| Sorghum bicolor voucher BTx623 locus pSB1914 genomic sequence Length = 806 Score = 56.0 bits (28), Expect = 7e-05 Identities = 115/144 (79%) Strand = Plus / Minus Query: 171 gcttctctgatttggaaggtcttcaaaatatttctagccttatcatactcgttcagcgcc 230 |||||||||| || || |||||||||||| |||||| ||||| ||||| || || Sbjct: 624 gcttctctgagctgaaacgtcttcaaaatagctctagctttatcgtactcattaaggctg 565 Query: 231 accaatatgttcttcaaacgacgcgccagcccacgtatctcttcttcactaacgcctgaa 290 ||||||| ||| ||||| ||||| || || |||||| ||||||| || |||| |||||| Sbjct: 564 accaatacgtttttcaatcgacgagctagaccacgtgtctcttcctcgctaatgcctgac 505 Query: 291 atgtgtctactcttgagcttgttt 314 ||||||| |||| ||||||||| Sbjct: 504 gtgtgtctcctctccagcttgttt 481
>emb|AL591591.6| Human DNA sequence from clone RP11-450E21 on chromosome X, complete sequence Length = 104117 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tatgtcaagggaaaaactaga 168 ||||||||||||||||||||| Sbjct: 23542 tatgtcaagggaaaaactaga 23562
>emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in linkage group 20, complete sequence Length = 242408 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 aattagacattacaacattcc 86 ||||||||||||||||||||| Sbjct: 117590 aattagacattacaacattcc 117610
>gb|AC078889.20| Homo sapiens 12 BAC RP11-335I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163992 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 acaaaaatggaattcttgttc 147 ||||||||||||||||||||| Sbjct: 116754 acaaaaatggaattcttgttc 116734
>emb|AL049435.1|HSM800220 Homo sapiens mRNA; cDNA DKFZp586B0220 (from clone DKFZp586B0220) Length = 2702 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 acaaaaatggaattcttgttc 147 ||||||||||||||||||||| Sbjct: 2130 acaaaaatggaattcttgttc 2150
>gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, complete sequence Length = 234420 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaaaatggaattcttgttct 148 |||||||||||||||||||| Sbjct: 90650 aaaaatggaattcttgttct 90631
>gb|AC158144.13| Mus musculus chromosome 7, clone RP23-82N3, complete sequence Length = 213341 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tggaaggtcttcaaaatatt 202 |||||||||||||||||||| Sbjct: 101862 tggaaggtcttcaaaatatt 101843
>gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence Length = 170587 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaaaatggaattcttgttct 148 |||||||||||||||||||| Sbjct: 112794 aaaaatggaattcttgttct 112775
>emb|AL590704.13| Human DNA sequence from clone RP11-106E7 on chromosome 6 Contains a novel pseudogene similar to FLJ23678 and part of the UTRN gene for utrophin (homologous to dystrophin) (DRP, DRP1, DMDL), complete sequence Length = 61097 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 aaggtcttcaaaatatttct 205 |||||||||||||||||||| Sbjct: 12316 aaggtcttcaaaatatttct 12297
>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence Length = 242297 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cctgaaatgtgtctactctt 304 |||||||||||||||||||| Sbjct: 223947 cctgaaatgtgtctactctt 223966
>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete sequence Length = 404829 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 123 ccaaacaaaaatggaattcttgttctat 150 |||||| |||||||||||||||| |||| Sbjct: 59056 ccaaactaaaatggaattcttgtgctat 59029
>gb|AC027680.5| Genomic sequence for Mus musculus, clone RP23-187P11, from chromosome 15, complete sequence Length = 16492 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cctgaaatgtgtctactctt 304 |||||||||||||||||||| Sbjct: 11996 cctgaaatgtgtctactctt 12015
>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence Length = 145544 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 aagggaaaaactagagagcttctc 177 |||||||||||| ||||||||||| Sbjct: 140208 aagggaaaaactggagagcttctc 140185
>gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, complete sequence Length = 143642 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 acattacaacattcccgtga 91 |||||||||||||||||||| Sbjct: 83264 acattacaacattcccgtga 83283
>gb|AC011716.7|AC011716 Homo sapiens chromosome 8 clone RP11-65D13, complete sequence Length = 172327 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 aagggaaaaactagagagcttctc 177 |||||||||||| ||||||||||| Sbjct: 152560 aagggaaaaactggagagcttctc 152583
>gb|AC006075.1|AC006075 Homo sapiens chromosome 16, BAC clone RPCI-11_192K18 , complete sequence Length = 169765 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 gccagcccacgtatctcttc 274 |||||||||||||||||||| Sbjct: 28969 gccagcccacgtatctcttc 28988
>gb|AC102815.31| Mus musculus chromosome 14, clone RP23-55A5, complete sequence Length = 151802 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 123 ccaaacaaaaatggaattcttgttctat 150 |||||| |||||||||||||||| |||| Sbjct: 118916 ccaaactaaaatggaattcttgtgctat 118889 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,397,771 Number of Sequences: 3902068 Number of extensions: 3397771 Number of successful extensions: 60383 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 60344 Number of HSP's gapped (non-prelim): 55 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
