ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 119 4e-24
2emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4,... 119 4e-24
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 119 4e-24
4dbj|AK108387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 1e-23
5ref|XM_480002.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.17
6emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4,... 44 0.17
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
8dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
9dbj|AK120206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.17
10dbj|AK110404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.17
11emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.17
12gb|AE005713.1| Caulobacter crescentus CB15 section 39 of 359 of ... 42 0.69
13gb|AC025362.12| Homo sapiens chromosome 17, clone RP11-89H15, co... 42 0.69
14gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, co... 42 0.69
15ref|XM_724123.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 2.7
16emb|AL844480.29| Mouse DNA sequence from clone RP23-190B10 on ch... 40 2.7
17emb|AL627394.15| Mouse DNA sequence from clone RP23-174I9 on chr... 40 2.7 
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
              complete sequence
          Length = 186325

 Score =  119 bits (60), Expect = 4e-24
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                          
Query: 88     tcaccagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaatcgaacggcgtc 147
              |||||| |||||||||||||| || ||||| | ||||||||||||||| |||||  | ||
Sbjct: 182151 tcaccaatagtccccgcaagaacaagaaccacttttgaagtggtgaaaccgaacaccatc 182210

                                                                          
Query: 148    tcgaatcacaaactcccgaccggtcaccgtcgatatcaacttgatcaccgtgtggcagtc 207
              ||| ||||||||||||||| | ||||| |  ||||||| |||||||||||||||||||||
Sbjct: 182211 tcggatcacaaactcccgatcagtcacagaagatatcagcttgatcaccgtgtggcagtc 182270

                      
Query: 208    gccgcaaa 215
               |||||||
Sbjct: 182271 cccgcaaa 182278
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>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16,
             complete sequence
          Length = 145739

 Score =  119 bits (60), Expect = 4e-24
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                         
Query: 88    tcaccagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaatcgaacggcgtc 147
             |||||| |||||||||||||| || ||||| | ||||||||||||||| |||||  | ||
Sbjct: 11824 tcaccaatagtccccgcaagaacaagaaccacttttgaagtggtgaaaccgaacaccatc 11883

                                                                         
Query: 148   tcgaatcacaaactcccgaccggtcaccgtcgatatcaacttgatcaccgtgtggcagtc 207
             ||| ||||||||||||||| | ||||| |  ||||||| |||||||||||||||||||||
Sbjct: 11884 tcggatcacaaactcccgatcagtcacagaagatatcagcttgatcaccgtgtggcagtc 11943

                     
Query: 208   gccgcaaa 215
              |||||||
Sbjct: 11944 cccgcaaa 11951
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 4e-24
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                            
Query: 88       tcaccagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaatcgaacggcgtc 147
                |||||| |||||||||||||| || ||||| | ||||||||||||||| |||||  | ||
Sbjct: 29509135 tcaccaatagtccccgcaagaacaagaaccacttttgaagtggtgaaaccgaacaccatc 29509194

                                                                            
Query: 148      tcgaatcacaaactcccgaccggtcaccgtcgatatcaacttgatcaccgtgtggcagtc 207
                ||| ||||||||||||||| | ||||| |  ||||||| |||||||||||||||||||||
Sbjct: 29509195 tcggatcacaaactcccgatcagtcacagaagatatcagcttgatcaccgtgtggcagtc 29509254

                        
Query: 208      gccgcaaa 215
                 |||||||
Sbjct: 29509255 cccgcaaa 29509262



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 84       atggtcaccagtagtccccgcaagagcagg 113
                |||||||||||||||||| |||||| ||||
Sbjct: 35122075 atggtcaccagtagtccctgcaagaacagg 35122104
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>dbj|AK108387.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F01, full
           insert sequence
          Length = 944

 Score =  117 bits (59), Expect = 1e-23
 Identities = 110/127 (86%)
 Strand = Plus / Minus

                                                                       
Query: 89  caccagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaatcgaacggcgtct 148
           ||||| |||||||||||||| || ||||| | ||||||||||||||| |||||  | |||
Sbjct: 823 caccaatagtccccgcaagaacaagaaccacttttgaagtggtgaaaccgaacaccatct 764

                                                                       
Query: 149 cgaatcacaaactcccgaccggtcaccgtcgatatcaacttgatcaccgtgtggcagtcg 208
           || ||||||||||||||| | ||||| |  ||||||| ||||||||||||||||||||| 
Sbjct: 763 cggatcacaaactcccgatcagtcacagaagatatcagcttgatcaccgtgtggcagtcc 704

                  
Query: 209 ccgcaaa 215
           |||||||
Sbjct: 703 ccgcaaa 697
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>ref|XM_480002.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3363

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 90   accagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaa 135
            |||||||||| |||||||| ||||  |||  |||||||||||||||
Sbjct: 2201 accagtagtcaccgcaagaacaggtcccgagtttgaagtggtgaaa 2156
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>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
             complete sequence
          Length = 144670

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 84    atggtcaccagtagtccccgcaagagcagg 113
             |||||||||||||||||| |||||| ||||
Sbjct: 58578 atggtcaccagtagtccctgcaagaacagg 58607
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 90      accagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaa 135
               |||||||||| |||||||| ||||  |||  |||||||||||||||
Sbjct: 2150325 accagtagtcaccgcaagaacaggtcccgagtttgaagtggtgaaa 2150280
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>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 90    accagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaa 135
             |||||||||| |||||||| ||||  |||  |||||||||||||||
Sbjct: 28587 accagtagtcaccgcaagaacaggtcccgagtttgaagtggtgaaa 28542
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>dbj|AK120206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038B04, full
            insert sequence
          Length = 3363

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 90   accagtagtccccgcaagagcaggaaccgcctttgaagtggtgaaa 135
            |||||||||| |||||||| ||||  |||  |||||||||||||||
Sbjct: 2201 accagtagtcaccgcaagaacaggtcccgagtttgaagtggtgaaa 2156
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>dbj|AK110404.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-G03, full
            insert sequence
          Length = 2518

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 84   atggtcaccagtagtccccgcaagagcagg 113
            |||||||||||||||||| |||||| ||||
Sbjct: 2361 atggtcaccagtagtccctgcaagaacagg 2332
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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 84    atggtcaccagtagtccccgcaagagcagg 113
             |||||||||||||||||| |||||| ||||
Sbjct: 77199 atggtcaccagtagtccctgcaagaacagg 77228
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>gb|AE005713.1| Caulobacter crescentus CB15 section 39 of 359 of the complete genome
          Length = 10234

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 132  gaaatcgaacggcgtctcgaa 152
            |||||||||||||||||||||
Sbjct: 6643 gaaatcgaacggcgtctcgaa 6623
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>gb|AC025362.12| Homo sapiens chromosome 17, clone RP11-89H15, complete sequence
          Length = 154664

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     tctttgttcccaatgagtctg 47
              |||||||||||||||||||||
Sbjct: 138984 tctttgttcccaatgagtctg 138964
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>gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, complete sequence
          Length = 179219

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tctttgttcccaatgagtctg 47
             |||||||||||||||||||||
Sbjct: 26291 tctttgttcccaatgagtctg 26271
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>ref|XM_724123.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01450)
            partial mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   acattttactcctctttgtt 34
            ||||||||||||||||||||
Sbjct: 1971 acattttactcctctttgtt 1952
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>emb|AL844480.29| Mouse DNA sequence from clone RP23-190B10 on chromosome 4, complete
            sequence
          Length = 175199

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   ggctacacagaaaaagaact 70
            ||||||||||||||||||||
Sbjct: 4420 ggctacacagaaaaagaact 4439
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>emb|AL627394.15| Mouse DNA sequence from clone RP23-174I9 on chromosome 4, complete
             sequence
          Length = 116283

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gggctacacagaaaaagaac 69
             ||||||||||||||||||||
Sbjct: 78521 gggctacacagaaaaagaac 78540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,676,250
Number of Sequences: 3902068
Number of extensions: 1676250
Number of successful extensions: 113001
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112921
Number of HSP's gapped (non-prelim): 80
length of query: 215
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 193
effective length of database: 17,147,199,772
effective search space: 3309409555996
effective search space used: 3309409555996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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