ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12f08 |
|---|---|
| Clone Library Name | barley_pub |
>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 634 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 179 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 54 CN +S LV D TH+G +GV SF +L+C+ + Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427
>DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 240 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 362 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 240 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 362 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 491 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Frame = +3 Query: 36 NFQYTLDTYTNKLKVKRHHQFNSYMSTRVGTSGMPVHSGNQTRLQLVTA---LVDGIKMF 206 ++ +T++ Y N + NSY ++ + + R+Q TA + GIK Sbjct: 205 DYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGIKQE 264 Query: 207 LDEPPANAEV*EHSEGSSVTT---TFTSEHAMLGN 302 D +N ++ H + T FT + M+GN Sbjct: 265 ADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGN 299
>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5| Length = 72 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 263 DDNLYLRACHAGELQKLASDQSLGGFPHSSGYSGFFFR 376 DD Y C G ++L GG+ + SG+ G+ +R Sbjct: 19 DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYR 56
>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)| Length = 750 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 335 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 225 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264
>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)| Length = 744 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 335 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 225 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264
>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)| Length = 758 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 22 SSKDVTFSTHLIHIQISLRSKDTTSSTPTCP 114 SSK + S+HL H+ + S +T + TCP Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175
>DNAK_CORJK (Q4JXX6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 620 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +3 Query: 138 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 317 P+ G +T+ ++T L++ + E S+ S F E M ++K L Sbjct: 370 PLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDSQPSVQIQVFQGEREMAAHNKLLG 429 Query: 318 QIKA*GVSLTPRGIP 362 + G++ PRG+P Sbjct: 430 SFELAGIAPAPRGVP 444
>DNAK_PSESG (Q9WWG9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/75 (22%), Positives = 31/75 (41%) Frame = +3 Query: 138 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 317 P+ G + ++TAL+ FL P+ ++ E + E G +K+L Sbjct: 396 PLTLGIEAMGGVMTALIKKTPRFLPRNPSVLTADDNQENAVAIHVLQGERKQAGQNKSLG 455 Query: 318 QIKA*GVSLTPRGIP 362 + + PRG+P Sbjct: 456 KFDLAEIPPAPRGVP 470
>RW1_MOUSE (O70472) RW1 protein| Length = 1829 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -3 Query: 359 NTPRSEGNPLGFDLMQVFGVPQHGMLGGKGCRH 261 N P G P FDL ++ G+ G L GC H Sbjct: 1110 NPPFDVGRP--FDLRRIVGISSEGNLNTLGCEH 1140
>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)| Length = 77 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -3 Query: 167 QSCLVARMDRHATCTHSGGHVG 102 Q +A DRH TC H G H G Sbjct: 26 QKXFLAACDRHDTCYHCGKHFG 47
>DNAK_MYCCT (Q2SSB0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 591 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 282 EHAMLGNSKNLHQIKA*GVSLTPRGIP 362 E AM ++K+L Q + G+ PRGIP Sbjct: 416 ERAMAADNKSLGQFQLTGIQPAPRGIP 442
>DNAK_MYCCA (P0C177) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 591 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 282 EHAMLGNSKNLHQIKA*GVSLTPRGIP 362 E AM ++K+L Q + G+ PRGIP Sbjct: 416 ERAMAADNKSLGQFQLTGIQPAPRGIP 442
>PER_DROPS (P12348) Period circadian protein| Length = 1241 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 266 DNLYLRACHAGELQKLASDQSLGGFPHSSGYSGF 367 D+ Y +C + Q+ S +S+ HSSG SG+ Sbjct: 16 DSAYSNSCSNSQSQRSGSSKSMLSGSHSSGSSGY 49
>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20| antigen-like 5) (Fragment) Length = 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = +3 Query: 99 NSYMSTRVGTSGMPVHSGNQTRLQLVTALVDGIKMFLDEPPA 224 NSY MP++ NQ ++ +++ + G+ + EPPA Sbjct: 56 NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97
>DNAK_RHILO (Q98DD1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 240 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 362 E S+ + F E M ++K L Q G+ PRG+P Sbjct: 425 EDSQSAVTIRVFQGEREMAADNKALGQFDLVGIPPAPRGVP 465
>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 140 RHATCTHSGGHVGVELVVSFDLKLICICIKCVLKVTSLELIR 15 R A+ G GV+ +VSF + L C C C +K T + R Sbjct: 83 RFASIRLPGCPPGVDPMVSFPVALSCHCGPCQIKTTDCGVFR 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,811,780 Number of Sequences: 219361 Number of extensions: 1340862 Number of successful extensions: 3700 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3700 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
