ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
2ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.001
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
7gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 44 0.32
8gb|AY104160.1| Zea mays PCO080306 mRNA sequence 44 0.32
9gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 1.3
10emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 1.3
11emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 42 1.3
12dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.3
13ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phos... 40 5.0
14gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cance... 40 5.0
15gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, com... 40 5.0
16gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 5.0
17ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
18ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
19gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, com... 40 5.0
20emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 i... 40 5.0
21gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 5.0
22gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, c... 40 5.0
23gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 5.0
24emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 5.0
25emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 5.0
26emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 5.0
27gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 5.0
28emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 5.0
29emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 5.0 
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 339  tccctcactcctcggggtattccgggttcttcttcaga 376
            ||||||||||||||   |||||||||||||||||||||
Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttcaga 2733
to top
>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 339  tccctcactcctcggggtattccgggttcttcttcaga 376
            ||||||||||||||   |||||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcaga 2740
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 339     tccctcactcctcggggtattccgggttcttcttcaga 376
               ||||||||||||||   |||||||||||||||||||||
Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttcaga 2570712
to top
>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 339   tccctcactcctcggggtattccgggttcttcttcaga 376
             ||||||||||||||   |||||||||||||||||||||
Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttcaga 49495
to top
>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 339  tccctcactcctcggggtattccgggttcttcttcaga 376
            ||||||||||||||   |||||||||||||||||||||
Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttcaga 2732
to top
>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 339  tccctcactcctcggggtattccgggttcttcttcaga 376
            ||||||||||||||   |||||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcaga 2740
to top
>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 194   aataaaaatgtttttggatgaa 215
             ||||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736
to top
>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 343  tcactcctcggggtattccgggttcttcttcaga 376
            |||||||||| |||| || |||||||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcaga 1011
to top
>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    tacacacttgatacatataca 65
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729
to top
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 47     cacacttgatacatatacaaa 67
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 47     cacacttgatacatatacaaa 67
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530
to top
>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 47     cacacttgatacatatacaaa 67
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830
to top
>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   tacacacttgatacatataca 65
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990
to top
>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase
            AT1G66980 mRNA, complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  taaaaatgtttttggatgaa 215
            ||||||||||||||||||||
Sbjct: 3459 taaaaatgtttttggatgaa 3440
to top
>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     acacacttgatacatataca 65
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679
to top
>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    acacacttgatacatataca 65
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862
to top
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   taaaaatgtttttggatgaa 215
             ||||||||||||||||||||
Sbjct: 27065 taaaaatgtttttggatgaa 27084
to top
>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  acatatacaaataagcttaa 76
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232
to top
>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  cacttgatacatatacaaat 68
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618
to top
>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cagttctaaagatgtaactt 40
             ||||||||||||||||||||
Sbjct: 64502 cagttctaaagatgtaactt 64521
to top
>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1,
             complete sequence
          Length = 121187

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctccaaaaacttgcatcaga 321
             ||||||||||||||||||||
Sbjct: 30564 ctccaaaaacttgcatcaga 30545
to top
>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    atgccgaggtgtaagagcat 245
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878
to top
>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cagttctaaagatgtaactt 40
             ||||||||||||||||||||
Sbjct: 67063 cagttctaaagatgtaactt 67044
to top
>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   atgccgaggtgtaagagcat 245
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393
to top
>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    taaaaatgtttttggatgaa 215
              ||||||||||||||||||||
Sbjct: 161862 taaaaatgtttttggatgaa 161843
to top
>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
              complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ctccaaaaacttgcatcaga 321
              ||||||||||||||||||||
Sbjct: 100541 ctccaaaaacttgcatcaga 100560
to top
>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tacacacttgatacatatac 64
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936
to top
>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   tttttggatgaaccaccagc 223
             ||||||||||||||||||||
Sbjct: 64488 tttttggatgaaccaccagc 64507
to top
>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   aataaaaatgtttttggatg 213
             ||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatg 61590
to top
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    acacacttgatacatataca 65
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,512,496
Number of Sequences: 3902068
Number of extensions: 3512496
Number of successful extensions: 63866
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63776
Number of HSP's gapped (non-prelim): 90
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top