ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12f07 |
|---|---|
| Clone Library Name | barley_pub |
>SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3.6.1.-)| (ATP-dependent helicase SNF2) (SWI/SNF complex component SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1) (Transcription factor TYE3) Length = 1703 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 175 KKRNAITTLHNSGDAPNLHKTHDEDTAPPSKNQPI 279 KK T + + APN +KTH E PP +P+ Sbjct: 391 KKEENETISNVAKTAPNSNKTHTEQNNPPKPQKPV 425
>TPP2_HUMAN (P29144) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1248 Score = 28.5 bits (62), Expect = 4.5 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Frame = +1 Query: 52 HMLFIQIEKPNMQQ*NIRIWIAHPSFSKTASLHYLASLASWKKRNAITT-LHNSGDAPNL 228 H +++EK + IR+ I H S L L + S + N ++ +H + L Sbjct: 874 HQYSLKLEKGDY---TIRLQIRHEQISDLERLKDLPFIVSHRLSNTLSLDIHENHSFALL 930 Query: 229 HKTHDED-TAPPSKNQPIVVT 288 K + T PP NQP VT Sbjct: 931 GKKKSSNLTLPPKYNQPFFVT 951
>STYK1_HUMAN (Q6J9G0) Tyrosine protein-kinase STYK1 (EC 2.7.10.2)| (Serine/threonine/tyrosine kinase 1) (Novel oncogene with kinase-domain) (Protein PK-unique) Length = 422 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +2 Query: 116 LTPVSPKQQVCIIWQAWHHGKKEMPLQPCTTQVTRQIYIKLMTRTQLPPQRINLLLLHIC 295 + PV P + + W+A H G +PL+ + + + + Q+P ++++ +L IC Sbjct: 64 IAPVPPPRDLS--WEAGHGGNVALPLKETSVENFLGATTPALAKLQVPREQLSEVLEQIC 121
>TPP2_RAT (Q64560) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1248 Score = 28.1 bits (61), Expect = 5.9 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Frame = +1 Query: 52 HMLFIQIEKPNMQQ*NIRIWIAHPSFSKTASLHYLASLASWKKRNAITT-LHNSGDAPNL 228 H +++EK + IR+ I H S L L + S + N ++ +H + L Sbjct: 874 HQYSLKLEKGDY---TIRLQIRHEQISDLDRLKDLPFIVSHRLSNTLSLDIHENHSLALL 930 Query: 229 HKTHDED-TAPPSKNQPIVVT 288 K T PP NQP VT Sbjct: 931 GKKKSSSLTLPPKYNQPFFVT 951
>TERL_LAMBD (P03708) Terminase large subunit (DNA packaging protein A) (GpA)| Length = 641 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 175 KKRNAITTLHNSGDAPNLHKTHDEDT 252 K+RN + L GDA N KTH E T Sbjct: 97 KQRNTLIWLPTDGDAENFMKTHVEPT 122
>SPRL_LISMO (Q8Y8K2) Protein sprT-like| Length = 155 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = +3 Query: 93 IKYKNLDCSPQFLQNSKSALSGKPGIMEKKKCHYNL 200 +K N++ +P++L+N L+ GIM+ + CHY+L Sbjct: 41 LKSHNIEMNPKYLENF--GLAYFIGIMKHELCHYHL 74
>SPRL_LISMF (Q721R7) Protein sprT-like| Length = 155 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = +3 Query: 93 IKYKNLDCSPQFLQNSKSALSGKPGIMEKKKCHYNL 200 +K N++ +P++L+N L+ GIM+ + CHY+L Sbjct: 41 LKSHNIEMNPKYLENF--GLAYFIGIMKHELCHYHL 74
>TPP2_MOUSE (Q64514) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1261 Score = 28.1 bits (61), Expect = 5.9 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Frame = +1 Query: 52 HMLFIQIEKPNMQQ*NIRIWIAHPSFSKTASLHYLASLASWKKRNAITT-LHNSGDAPNL 228 H +++EK + IR+ I H S L L + S + N ++ +H + L Sbjct: 874 HQYSLKLEKGDY---TIRLQIRHEQISDLDRLKDLPFIVSHRLSNTLSLDIHENHSLALL 930 Query: 229 HKTHDED-TAPPSKNQPIVVT 288 K T PP NQP VT Sbjct: 931 GKKKSSSLTLPPKYNQPFFVT 951
>SYA_MYCHJ (Q4AAD3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 880 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -2 Query: 187 HFFFSMMPGLPDNADLLFWRNWGEQSRFLYF 95 HFF P +P N D L W N G + YF Sbjct: 19 HFFIESKPLVPQNDDSLLWINSGVATLKDYF 49
>SYA_MYCH7 (Q4A8G4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 880 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -2 Query: 187 HFFFSMMPGLPDNADLLFWRNWGEQSRFLYF 95 HFF P +P N D L W N G + YF Sbjct: 19 HFFIESKPLVPQNDDSLLWINSGVATLKDYF 49
>6PGL_DROME (Q9VZ64) Putative 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL)| Length = 243 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 188 PLQPCTTQVTRQIYIKLMTRTQLPPQRINLLL 283 P QP T Q T+++ I + + PP+RI L Sbjct: 151 PEQPATLQETKRLVIPIRNSPKPPPERITFTL 182
>SYA_MYCH2 (Q601M2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 883 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -2 Query: 187 HFFFSMMPGLPDNADLLFWRNWGEQSRFLYF 95 HFF P +P N D L W N G + YF Sbjct: 22 HFFIESKPLVPQNDDSLLWINSGVATLKDYF 52
>EFP_TREDE (Q73P31) Elongation factor P (EF-P)| Length = 187 Score = 27.7 bits (60), Expect = 7.7 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Frame = +3 Query: 36 LWNTGTHVVYTNRK-------AQYATIKYKNLDCSPQFLQNSKSALSGKPGIMEKKKCHY 194 L N GT + R+ A +A +K KNL +Q K+A + + +++ KC Y Sbjct: 13 LLNKGTPYLVVEREFVNPGKGAAFARVKMKNLRDGSVLMQTIKTADTVEDAVVDTHKCQY 72
>PHOSP_PI1HE (P32532) Phosphoprotein (Protein P)| Length = 568 Score = 27.3 bits (59), Expect = 10.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = +1 Query: 178 KRNAITTLHNS--GDAPNL--HKTHDEDTAPPSKNQPIVVT 288 +R + LH S GD+ NL H T PPSKN+ VT Sbjct: 242 ERTQNSELHKSTSGDSSNLEDHNTKTSQKIPPSKNEEPAVT 282
>OXAA_SHIFL (P59783) Inner membrane protein oxaA| Length = 548 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 149 IIWQAWHHGKKEMPLQPCTTQVT 217 +IWQAW K P TTQ T Sbjct: 18 MIWQAWEQDKNPQPQAQQTTQTT 40
>OXAA_SALTY (Q8ZKY4) Inner membrane protein oxaA| Length = 548 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 149 IIWQAWHHGKKEMPLQPCTTQVT 217 +IWQAW K P TTQ T Sbjct: 18 MIWQAWEQDKNPQPQTQQTTQTT 40
>OXAA_ECOLI (P25714) Inner membrane protein oxaA| Length = 548 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 149 IIWQAWHHGKKEMPLQPCTTQVT 217 +IWQAW K P TTQ T Sbjct: 18 MIWQAWEQDKNPQPQAQQTTQTT 40
>OXAA_ECOL6 (P65624) Inner membrane protein oxaA| Length = 548 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 149 IIWQAWHHGKKEMPLQPCTTQVT 217 +IWQAW K P TTQ T Sbjct: 18 MIWQAWEQDKNPQPQAQQTTQTT 40
>OXAA_ECO57 (P65625) Inner membrane protein oxaA| Length = 548 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 149 IIWQAWHHGKKEMPLQPCTTQVT 217 +IWQAW K P TTQ T Sbjct: 18 MIWQAWEQDKNPQPQAQQTTQTT 40
>NPC1_MOUSE (O35604) Niemann-Pick C1 protein precursor| Length = 1278 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 133 WRNWGEQSRFLYFIVAYWAFLFV 65 WR WG + ++ V Y AFLFV Sbjct: 261 WRIWGLDAMYVIMWVTYVAFLFV 283
>UBC7_YEAST (Q02159) Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 165 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +1 Query: 190 ITTLHNSGDAPNLHKTHDEDTAPPSKNQPIVVTYM 294 I+ LH+ GD PN+++ +E +P + I+++ M Sbjct: 90 ISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM 124
>SPRL_LISIN (Q92DB7) Protein sprT-like| Length = 155 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +3 Query: 93 IKYKNLDCSPQFLQNSKSALSGKPGIMEKKKCHYNL 200 +K N++ +P++L+N L GIM+ + CHY+L Sbjct: 41 LKSHNIEMNPKYLENF--GLEYFFGIMKHELCHYHL 74
>REV1_HUMAN (Q9UBZ9) DNA repair protein REV1 (EC 2.7.7.-) (Rev1-like terminal| deoxycytidyl transferase) (Alpha integrin-binding protein 80) (AIBP80) Length = 1251 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +2 Query: 137 QQVCIIWQAWHHG-KKEMPLQPCTTQVTRQ 223 +QVC + QA HG KK+ P+ C T + Q Sbjct: 955 EQVCAVQQAESHGDKKKEPVNGCNTGILPQ 984
>AT8B4_HUMAN (Q8TF62) Probable phospholipid-transporting ATPase IM (EC 3.6.3.1)| (ATPase class I type 8B member 4) Length = 1192 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 139 LFWRNWGEQSRFLYFIVAYWAFLFV*TTCVPV 44 LFW N GE+S + +W+++ + T VP+ Sbjct: 310 LFW-NEGEKSSVFSGFLTFWSYIIILNTVVPI 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,014,398 Number of Sequences: 219361 Number of extensions: 968846 Number of successful extensions: 2344 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2344 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
