Clone Name | rbastl12f07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172875 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 aaatttacataaaactcatgac 243 |||||||||||||||||||||| Sbjct: 22449 aaatttacataaaactcatgac 22470
>gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, complete sequence Length = 193256 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 attgttgttacatatatgtat 297 ||||||||||||||||||||| Sbjct: 40210 attgttgttacatatatgtat 40230
>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence Length = 171912 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 attgttgttacatatatgtat 297 ||||||||||||||||||||| Sbjct: 17989 attgttgttacatatatgtat 18009
>gb|AC097641.6| Homo sapiens, clone RP11-143K11, complete sequence Length = 167127 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 aacaataaaatataagaatct 109 ||||||||||||||||||||| Sbjct: 99791 aacaataaaatataagaatct 99811
>gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosome 1, complete sequence Length = 147442 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 attgttgttacatatatgtat 297 ||||||||||||||||||||| Sbjct: 87408 attgttgttacatatatgtat 87428
>gb|AY113518.1| Drosophila melanogaster RE59956 full insert cDNA Length = 2285 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 2156 aaatttacataaaactcatga 2136
>ref|NM_136058.3| Drosophila melanogaster Grip71 CG10346-RA (Grip71), mRNA Length = 2281 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 2159 aaatttacataaaactcatga 2139
>gb|AY070955.1| Drosophila melanogaster RE05579 full length cDNA Length = 2285 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 2156 aaatttacataaaactcatga 2136
>gb|AC009203.5|AC009203 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone BACR07J05, complete sequence Length = 172061 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 8321 aaatttacataaaactcatga 8301
>gb|BT024418.1| Drosophila melanogaster IP03305 full insert cDNA Length = 1807 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 1676 aaatttacataaaactcatga 1696
>gb|AC007137.20|AC007137 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR25C02, complete sequence Length = 171454 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 147923 aaatttacataaaactcatga 147903
>gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69 of 83 of the complete sequence Length = 232737 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 aaatttacataaaactcatga 242 ||||||||||||||||||||| Sbjct: 34081 aaatttacataaaactcatga 34061
>emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chromosome 4, complete sequence Length = 185441 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 54 catgttgtttatacaaatagaaaag 78 ||||||||||||||| ||||||||| Sbjct: 175746 catgttgtttatacatatagaaaag 175722
>gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosome 13, complete sequence Length = 188096 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 attgttgttacatatatgtat 297 ||||||||||||||||||||| Sbjct: 7537 attgttgttacatatatgtat 7517
>gb|AC171729.1| Lycopersicon esculentum chromosome 01 clone C01HBa0252G05, complete sequence Length = 163336 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 atgcaacaataaaatataaga 105 ||||||||||||||||||||| Sbjct: 68062 atgcaacaataaaatataaga 68042
>gb|AC115067.7| Mus musculus chromosome 5, clone RP24-404B4, complete sequence Length = 163303 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tgtttatacaaatagaaaag 78 |||||||||||||||||||| Sbjct: 133121 tgtttatacaaatagaaaag 133102
>gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, complete sequence Length = 158563 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tgtttatacaaatagaaaag 78 |||||||||||||||||||| Sbjct: 53204 tgtttatacaaatagaaaag 53185
>gb|AC149528.2| Xenopus tropicalis clone ISB-292P1, complete sequence Length = 87806 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 agaaaagcccaatatgcaacaata 95 ||||||||||| |||||||||||| Sbjct: 34402 agaaaagcccattatgcaacaata 34425
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 ggattgctcaccccagtttctcca 133 ||||||| |||||||||||||||| Sbjct: 16878 ggattgcccaccccagtttctcca 16855
>gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosome 8, complete sequence Length = 235813 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ttgttgttacatatatgtat 297 |||||||||||||||||||| Sbjct: 127510 ttgttgttacatatatgtat 127529
>gb|AC102487.6| Mus musculus chromosome 5, clone RP24-496C22, complete sequence Length = 167936 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tggaacacagggacacatgt 58 |||||||||||||||||||| Sbjct: 100766 tggaacacagggacacatgt 100747
>gb|AC131330.25| Mus musculus chromosome 14, clone RP23-477H13, complete sequence Length = 166214 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ttgtttatacaaatagaaaa 77 |||||||||||||||||||| Sbjct: 26213 ttgtttatacaaatagaaaa 26232
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ggattgctcaccccagtttctcca 133 ||||||| |||||||||||||||| Sbjct: 103395 ggattgcccaccccagtttctcca 103418
>gb|AC140298.3| Mus musculus BAC clone RP24-319I6 from chromosome 18, complete sequence Length = 148703 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 attgttgttacatatatgta 296 |||||||||||||||||||| Sbjct: 86322 attgttgttacatatatgta 86341
>gb|AC121965.3| Mus musculus BAC clone RP24-262G23 from chromosome 12, complete sequence Length = 170835 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cagctcccccctcaaagaat 270 |||||||||||||||||||| Sbjct: 149131 cagctcccccctcaaagaat 149150
>gb|AC105256.7| Mus musculus BAC clone RP23-413O13 from chromosome 8, complete sequence Length = 210086 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 acctattgttgttacatata 292 |||||||||||||||||||| Sbjct: 130309 acctattgttgttacatata 130290
>gb|AC122033.5| Mus musculus BAC clone RP24-403A7 from chromosome 17, complete sequence Length = 119877 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cagctcccccctcaaagaat 270 |||||||||||||||||||| Sbjct: 95398 cagctcccccctcaaagaat 95417
>gb|AC126254.3| Mus musculus BAC clone RP24-132D17 from chromosome 17, complete sequence Length = 167995 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cagctcccccctcaaagaat 270 |||||||||||||||||||| Sbjct: 164601 cagctcccccctcaaagaat 164582
>ref|XM_724198.1| Plasmodium yoelii yoelii str. 17XNL orotidine-monophosphate-decarboxylase (PY01515) partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ataaaatataagaatctgga 112 |||||||||||||||||||| Sbjct: 796 ataaaatataagaatctgga 777
>emb|BX927225.7| Zebrafish DNA sequence from clone CH211-106F9 in linkage group 6, complete sequence Length = 161068 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 atgaagcaaatctgtgtatt 21 |||||||||||||||||||| Sbjct: 153071 atgaagcaaatctgtgtatt 153052
>emb|AL591518.8| Human DNA sequence from clone RP11-114N1 on chromosome 6 Contains a CpG island, complete sequence Length = 119021 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tgctcaccccagtttctcca 133 |||||||||||||||||||| Sbjct: 32061 tgctcaccccagtttctcca 32042
>emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in linkage group 12, complete sequence Length = 223071 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 aatatgcaacaataaaatat 101 |||||||||||||||||||| Sbjct: 50582 aatatgcaacaataaaatat 50601
>gb|AC068405.5| Homo sapiens chromosome 11, clone RP11-71F16, complete sequence Length = 154774 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 ctttggaacacagggacacatgtt 59 ||||||||||||||| |||||||| Sbjct: 127337 ctttggaacacaggggcacatgtt 127314
>gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, complete sequence Length = 211445 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctttggaacacagggacacatgtt 59 ||||||||||||||| |||||||| Sbjct: 189720 ctttggaacacaggggcacatgtt 189743
>gb|AC025623.8| Homo sapiens chromosome 11, clone RP11-417O17, complete sequence Length = 151329 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctttggaacacagggacacatgtt 59 ||||||||||||||| |||||||| Sbjct: 112920 ctttggaacacaggggcacatgtt 112943
>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence Length = 176418 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 ctattgttgttacatatatgtatc 298 ||||||||||||||||||| |||| Sbjct: 16048 ctattgttgttacatatatttatc 16025
>gb|AC104339.10| Homo sapiens chromosome 8, clone RP11-777J24, complete sequence Length = 194212 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 ctattgttgttacatatatgtatc 298 ||||||||||||||||||| |||| Sbjct: 134890 ctattgttgttacatatatttatc 134867
>gb|AC154186.1| Mus musculus BAC clone RP24-435B3 from chromosome 14, complete sequence Length = 167900 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ttgtttatacaaatagaaaa 77 |||||||||||||||||||| Sbjct: 56873 ttgtttatacaaatagaaaa 56854
>dbj|AP003499.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-178H8, complete sequence Length = 193227 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttacatatatgtat 297 |||||||||||||||||||| Sbjct: 49521 ttgttgttacatatatgtat 49502
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence Length = 168439 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 ggattgctcaccccagtttctcca 133 ||||||| |||||||||||||||| Sbjct: 105026 ggattgcccaccccagtttctcca 105003
>emb|AL928594.11| Mouse DNA sequence from clone RP23-35H8 on chromosome X, complete sequence Length = 204635 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttacatatatgtat 297 |||||||||||||||||||| Sbjct: 202500 ttgttgttacatatatgtat 202481
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 aatatgcaacaataaaatat 101 |||||||||||||||||||| Sbjct: 3280366 aatatgcaacaataaaatat 3280347
>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence Length = 209585 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 tttacataaaactcatgacgagga 248 |||||||||||||||| ||||||| Sbjct: 102065 tttacataaaactcatcacgagga 102042
>gb|AC164414.5| Mus musculus chromosome 1, clone RP24-75E15, complete sequence Length = 213369 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttacatatatgtat 297 |||||||||||||||||||| Sbjct: 111165 ttgttgttacatatatgtat 111146 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,616,035 Number of Sequences: 3902068 Number of extensions: 3616035 Number of successful extensions: 81114 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81009 Number of HSP's gapped (non-prelim): 105 length of query: 308 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 286 effective length of database: 17,147,199,772 effective search space: 4904099134792 effective search space used: 4904099134792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)