ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12f06 |
|---|---|
| Clone Library Name | barley_pub |
>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3| precursor Length = 556 Score = 33.9 bits (76), Expect = 0.22 Identities = 28/96 (29%), Positives = 42/96 (43%) Frame = +2 Query: 17 LQFYFDAHNVLSSVRRIFCKAGSSTPENQDSGSSICRSTWQIALRYPLCCTSSGSFSMLA 196 + Y +A +SSV K GSST + SS+ S+ QI+ T S M+A Sbjct: 126 MNVYVNAETFVSSVESSSSKEGSSTSYMPSTTSSL--SSAQISSTTRRTSTDMKSSEMIA 183 Query: 197 TFSNFSRARSTSAGDATADTEPGTTRRSLWSSGGDS 304 T + + S+S T+ T TT + S+ S Sbjct: 184 TTVSTTSTTSSSTSSTTSSTTSSTTSSTTSSTTSSS 219
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 32.7 bits (73), Expect = 0.48 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 16/123 (13%) Frame = +2 Query: 92 PENQDSGSSICR-----STWQIALRYPLCCTSSGSFSMLATFSNFSRARSTSAGDAT--- 247 P NQD G+ + T QI LR PL C S L + S G+A Sbjct: 260 PRNQDIGALLANRLITLKTKQIFLRSPLTCKSMNWICQLCYGWSLSHGNLIEMGEAVGII 319 Query: 248 ---ADTEPGT--TRRSLWSSG---GDSAHCIAQMERGRM*CSDRYPPPASDVHASGVWNA 403 + EPGT T R+ + G GD A + G + ++ + P H W Sbjct: 320 AGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFNGIIEFNENFVYPTRTRHGHPAWMC 379 Query: 404 YPN 412 + N Sbjct: 380 HTN 382
>HID_DROME (Q24106) Cell death protein W (Protein head involution defective)| (Protein wrinkled) Length = 410 Score = 30.4 bits (67), Expect = 2.4 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 17/135 (12%) Frame = +2 Query: 77 AGSSTPENQDSGSSICRSTWQIALRYPLCCTSSGSFSMLATFSNFSRARSTSAGDATADT 256 +G+S+P N SS S +SSG S A+ ++ S + S+ + A Sbjct: 23 SGNSSPHNHPLPSSASSSV-----------SSSGVSSASASSASSSSSASSDGASSAASQ 71 Query: 257 EPGTTRRSLWSSGGDSAHCIAQM-----ERGRM*CSD-------RYPPPASDVHASG--- 391 P TT S + S Q+ E RM S +YPPP+ + +G Sbjct: 72 SPNTTTSSATQTPMQSPLPTDQVLYALYEWVRMYQSQQSAPQIFQYPPPSPSCNFTGGDV 131 Query: 392 -VWNAYPNP-SLPHP 430 + +PNP S PHP Sbjct: 132 FFPHGHPNPNSNPHP 146
>YFAS_ECOLI (P76464) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 29.6 bits (65), Expect = 4.1 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Frame = -2 Query: 444 GAHDAGWGRDGFGYAFQTPEAWTSD------AGGGYRSLHYMRPLSIWAMQWALSPPELH 283 GA WG DG G AF T AW +D G + ++ L +A Q A + P LH Sbjct: 1116 GARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQ-ADNMPLLH 1174 Query: 282 RDL 274 R L Sbjct: 1175 RAL 1177
>YFAS_ECO57 (Q8XE35) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 29.6 bits (65), Expect = 4.1 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Frame = -2 Query: 444 GAHDAGWGRDGFGYAFQTPEAWTSD------AGGGYRSLHYMRPLSIWAMQWALSPPELH 283 GA WG DG G AF T AW +D G + ++ L +A Q A + P LH Sbjct: 1116 GARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQ-ADNMPLLH 1174 Query: 282 RDL 274 R L Sbjct: 1175 RAL 1177
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 29.6 bits (65), Expect = 4.1 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Frame = +2 Query: 71 CKAGSSTPENQDSGSSICRSTWQIALRYPLCCTSSGSFSMLATFSNFSRARST-SAGDAT 247 C+ G + PE + + S+ + + + +G+ S+ FSN S T S G AT Sbjct: 4720 CRTGPAPPEGLQAPTFHTVSSTRAVVNISVPSRPNGNISLFRVFSNSSGTHVTLSEGTAT 4779 Query: 248 ADTEPGTTRRSLWSSGGDSAHCIAQMERGRM*CSDRYPPPAS 373 T + + ++ G ++ C RG +P P S Sbjct: 4780 QQTLHDLSPFTTYTIGVEACTCFNCCSRGPTAELRTHPAPPS 4821
>DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (NADH/NADPH thyroid oxidase p138-tox) (p138 thyroid oxidase) (Large NOX 2) (Long NOX 2) Length = 1548 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 326 ERGRM*CSDRYPPPASDVHASGVWNAYPNPSLPHPASCAPFAVRNAASV 472 ERG + C + PA+ +A GV+ A P LP+P + A R A + Sbjct: 49 ERGAVGCRLQRRVPAN--YADGVYQALEEPQLPNPRRLSNAATRGIAGL 95
>RCEL_RHORU (P10717) Reaction center protein L chain (Photosynthetic reaction| center L subunit) Length = 275 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -2 Query: 426 WGRDGFGYAFQTPEAWTSDAGGGYRSLHY 340 WG GF Y F T W S+ G Y + HY Sbjct: 142 WGY-GFPYGFMTHLDWVSNTGYQYANFHY 169
>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog| Length = 242 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 356 YPPPASDVHASGVWNAYPNPSLPHPASCAPFAVRN 460 +PPP GV YP P++P P P+A N Sbjct: 89 FPPPGPSCPPPGV--PYPAPAVPGPGPTGPYATPN 121
>CSW_DROVI (Q24708) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 764 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +2 Query: 212 SRARSTSAGDATADTEPGT-TRRSLWSSGGDSAHCIAQMERGRM*CSDRYPPPASDVHAS 388 S + S SA + A T PGT T S+ C+A + + C D PPP++ S Sbjct: 251 SESMSASANASAAGTGPGTPTAAGNTSAAAALNGCLAVLLKKH--CGDASPPPSTTSSCS 308 Query: 389 G 391 G Sbjct: 309 G 309 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,707,874 Number of Sequences: 219361 Number of extensions: 1062793 Number of successful extensions: 3496 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3493 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
