ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL360004.22| Human DNA sequence from clone RP11-88G17 on chr... 42 1.4
2gb|AC140340.3| Mus musculus BAC clone RP24-260O19 from chromosom... 40 5.6
3gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete... 40 5.6
4gb|AC142101.4| Mus musculus BAC clone RP24-322G3 from chromosome... 40 5.6
5gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, comp... 40 5.6
6gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
7gb|AC145816.1| Pan troglodytes BAC clone RP43-6A13 from 7, compl... 40 5.6
8emb|AL357934.29| Human DNA sequence from clone RP11-565P9 on chr... 40 5.6
9gb|BC054703.1| Danio rerio cDNA clone IMAGE:2599740, partial cds 40 5.6
10emb|BX050838.1|CNS09BE2 Single read from an extremity of a full-... 40 5.6
11emb|BX023711.1|CNS08QGJ Single read from an extremity of a full-... 40 5.6
12emb|BX548069.7| Zebrafish DNA sequence from clone CH211-238G23 i... 40 5.6
13emb|BX005414.13| Zebrafish DNA sequence from clone DKEY-21C19 in... 40 5.6
14gb|AC113404.3| Homo sapiens chromosome 5 clone RP11-466P24, comp... 40 5.6
15gb|AE014181.1| Mus musculus piebald deletion region section 9 of... 40 5.6
16gb|AC104625.2| Drosophila melanogaster X BAC RP98-48G8 (Roswell ... 40 5.6
17gb|AC023681.5| Drosophila melanogaster X BAC RP98-39P3 (Roswell ... 40 5.6
18gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswel... 40 5.6
19gb|AE005992.1| Caulobacter crescentus CB15 section 318 of 359 of... 40 5.6
20gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, comp... 40 5.6
21ref|XM_687097.1| PREDICTED: Danio rerio similar to SUMO1/sentrin... 40 5.6
22ref|XM_685599.1| PREDICTED: Danio rerio similar to SUMO1/sentrin... 40 5.6
23ref|XM_684332.1| PREDICTED: Danio rerio similar to mixed lineage... 40 5.6
24gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell ... 40 5.6
25gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromoso... 40 5.6
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
27dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
29emb|BX005387.7| Zebrafish DNA sequence from clone DKEY-97G16 in ... 40 5.6
30gb|AC084546.1|CBRG30J20 Caenorhabditis briggsae cosmid G30J20, c... 40 5.6
31dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 5.6
32dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
33dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
34ref|XM_318933.2| Anopheles gambiae str. PEST ENSANGP00000015878 ... 40 5.6
35gb|AE003489.2| Drosophila melanogaster chromosome X, section 41 ... 40 5.6
36gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 ... 40 5.6
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
39emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.6
40gb|AC000402.1|AC000402 Genomic sequence from Human 9q34, complet... 40 5.6 
>emb|AL360004.22| Human DNA sequence from clone RP11-88G17 on chromosome 9 Contains the
             3' end of a novel gene, the 3' end of the GPR107 gene for
             G protein-coupled receptor 107 (LUSTR1), the FREQ gene for
             frequenin homolog (Drosophila) (neuronal calcium sensor
             1), the 5' end of a novel pseudogene and two CpG islands,
             complete sequence
          Length = 182211

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   aaattcaacacctttttcttt 120
             |||||||||||||||||||||
Sbjct: 82245 aaattcaacacctttttcttt 82265
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>gb|AC140340.3| Mus musculus BAC clone RP24-260O19 from chromosome 14, complete sequence
          Length = 168454

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tttctttccttctagtctag 133
              ||||||||||||||||||||
Sbjct: 130204 tttctttccttctagtctag 130223
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>gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete sequence
          Length = 177380

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    acctttttctttccttctag 128
              ||||||||||||||||||||
Sbjct: 154069 acctttttctttccttctag 154050
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>gb|AC142101.4| Mus musculus BAC clone RP24-322G3 from chromosome 19, complete sequence
          Length = 210803

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaaacaaaaacagtttcttt 20
              ||||||||||||||||||||
Sbjct: 131229 aaaacaaaaacagtttcttt 131210
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>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence
          Length = 155731

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   acctttttctttccttctag 128
             ||||||||||||||||||||
Sbjct: 76267 acctttttctttccttctag 76286
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>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    gaccaggaccagaaaaaacc 44
             ||||||||||||||||||||
Sbjct: 90245 gaccaggaccagaaaaaacc 90226
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>gb|AC145816.1| Pan troglodytes BAC clone RP43-6A13 from 7, complete sequence
          Length = 200683

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tttttctttccttctagtct 131
             ||||||||||||||||||||
Sbjct: 12365 tttttctttccttctagtct 12346
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>emb|AL357934.29| Human DNA sequence from clone RP11-565P9 on chromosome 9 Contains part
             of the VAV2 gene for vav 2 oncogene, complete sequence
          Length = 95505

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   cacctttttctttccttcta 127
             ||||||||||||||||||||
Sbjct: 77158 cacctttttctttccttcta 77139
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>gb|BC054703.1| Danio rerio cDNA clone IMAGE:2599740, partial cds
          Length = 2395

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  ttcaacacctttttctttcc 122
            ||||||||||||||||||||
Sbjct: 2136 ttcaacacctttttctttcc 2155
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>emb|BX050838.1|CNS09BE2 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC27CC11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 908

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ctcctcctcccgcatcaggt 345
           ||||||||||||||||||||
Sbjct: 244 ctcctcctcccgcatcaggt 225
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>emb|BX023711.1|CNS08QGJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA36AH03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 706

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ctcctcctcccgcatcaggt 345
           ||||||||||||||||||||
Sbjct: 263 ctcctcctcccgcatcaggt 244
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>emb|BX548069.7| Zebrafish DNA sequence from clone CH211-238G23 in linkage group 18,
             complete sequence
          Length = 142514

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aatacaaattcaacaccttt 114
             ||||||||||||||||||||
Sbjct: 97873 aatacaaattcaacaccttt 97854
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>emb|BX005414.13| Zebrafish DNA sequence from clone DKEY-21C19 in linkage group 23,
              complete sequence
          Length = 236036

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ttcaacacctttttctttcc 122
              ||||||||||||||||||||
Sbjct: 203738 ttcaacacctttttctttcc 203719
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>gb|AC113404.3| Homo sapiens chromosome 5 clone RP11-466P24, complete sequence
          Length = 197591

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tactttacaattccaaaatg 207
              ||||||||||||||||||||
Sbjct: 188390 tactttacaattccaaaatg 188409
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>gb|AE014181.1| Mus musculus piebald deletion region section 9 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tttctttccttctagtctag 133
              ||||||||||||||||||||
Sbjct: 337805 tttctttccttctagtctag 337824
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>gb|AC104625.2| Drosophila melanogaster X BAC RP98-48G8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172105

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tgaaacgaaacgaaacgagt 263
             ||||||||||||||||||||
Sbjct: 66176 tgaaacgaaacgaaacgagt 66157
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>gb|AC023681.5| Drosophila melanogaster X BAC RP98-39P3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 153733

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    tgaaacgaaacgaaacgagt 263
              ||||||||||||||||||||
Sbjct: 108670 tgaaacgaaacgaaacgagt 108651
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>gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 192588

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gaaacgaaacgaaacgagtc 264
             ||||||||||||||||||||
Sbjct: 17950 gaaacgaaacgaaacgagtc 17969
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>gb|AE005992.1| Caulobacter crescentus CB15 section 318 of 359 of the complete genome
          Length = 12497

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 377   ccccgaccgcgcccccgccggcga 400
             ||||||||||||||||| ||||||
Sbjct: 10648 ccccgaccgcgcccccgacggcga 10671
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>gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, complete sequence
          Length = 149207

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaaacagtttctttttagga 26
              ||||||||||||||||||||
Sbjct: 108742 aaaacagtttctttttagga 108723
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>ref|XM_687097.1| PREDICTED: Danio rerio similar to SUMO1/sentrin specific protease 1
            (LOC563740), mRNA
          Length = 3662

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  ttcaacacctttttctttcc 122
            ||||||||||||||||||||
Sbjct: 2130 ttcaacacctttttctttcc 2149
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>ref|XM_685599.1| PREDICTED: Danio rerio similar to SUMO1/sentrin specific protease 1
            (LOC562201), mRNA
          Length = 3388

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  ttcaacacctttttctttcc 122
            ||||||||||||||||||||
Sbjct: 2131 ttcaacacctttttctttcc 2150
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>ref|XM_684332.1| PREDICTED: Danio rerio similar to mixed lineage kinase 2
           (LOC560932), mRNA
          Length = 3246

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  aatacaaattcaacaccttt 114
           ||||||||||||||||||||
Sbjct: 121 aatacaaattcaacaccttt 140
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>gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 168047

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gaaacgaaacgaaacgagtc 264
             ||||||||||||||||||||
Sbjct: 57300 gaaacgaaacgaaacgagtc 57319
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>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete
            sequence
          Length = 308703

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  aacacctttttctttccttc 125
            ||||||||||||||||||||
Sbjct: 2240 aacacctttttctttccttc 2259
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     cgcgcccccgccggcgagaa 403
               ||||||||||||||||||||
Sbjct: 3936534 cgcgcccccgccggcgagaa 3936515
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       gaccaggaccagaaaaaacc 44
                ||||||||||||||||||||
Sbjct: 24732243 gaccaggaccagaaaaaacc 24732262
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 319      tcgactcctcctcctcccgc 338
                ||||||||||||||||||||
Sbjct: 17346338 tcgactcctcctcctcccgc 17346357
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>emb|BX005387.7| Zebrafish DNA sequence from clone DKEY-97G16 in linkage group 7,
             complete sequence
          Length = 152617

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ttcaacacctttttctttcc 122
             ||||||||||||||||||||
Sbjct: 64187 ttcaacacctttttctttcc 64168
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>gb|AC084546.1|CBRG30J20 Caenorhabditis briggsae cosmid G30J20, complete sequence
          Length = 35833

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aattcaacacctttttcttt 120
             ||||||||||||||||||||
Sbjct: 33140 aattcaacacctttttcttt 33159
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 94      caatacaaattcaacacctttttctttc 121
               ||||||||| | ||||||||||||||||
Sbjct: 2492575 caatacaaagttaacacctttttctttc 2492602
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>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0640E12
          Length = 167353

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    tcgactcctcctcctcccgc 338
              ||||||||||||||||||||
Sbjct: 151463 tcgactcctcctcctcccgc 151482
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>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0434A03
          Length = 146505

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tcgactcctcctcctcccgc 338
             ||||||||||||||||||||
Sbjct: 14562 tcgactcctcctcctcccgc 14581
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>ref|XM_318933.2| Anopheles gambiae str. PEST ENSANGP00000015878
           (ENSANGG00000013389), partial mRNA
          Length = 1074

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ctcctcctcccgcatcaggt 345
           ||||||||||||||||||||
Sbjct: 153 ctcctcctcccgcatcaggt 134
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>gb|AE003489.2| Drosophila melanogaster chromosome X, section 41 of 74 of the complete
              sequence
          Length = 291799

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    tgaaacgaaacgaaacgagt 263
              ||||||||||||||||||||
Sbjct: 242691 tgaaacgaaacgaaacgagt 242710
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>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete
             sequence
          Length = 286515

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gaaacgaaacgaaacgagtc 264
             ||||||||||||||||||||
Sbjct: 43979 gaaacgaaacgaaacgagtc 43998
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       gaccaggaccagaaaaaacc 44
                ||||||||||||||||||||
Sbjct: 25043913 gaccaggaccagaaaaaacc 25043932
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     cgcgcccccgccggcgagaa 403
               ||||||||||||||||||||
Sbjct: 3936508 cgcgcccccgccggcgagaa 3936489
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>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   cgcgcccccgccggcgagaa 403
             ||||||||||||||||||||
Sbjct: 98510 cgcgcccccgccggcgagaa 98491
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>gb|AC000402.1|AC000402 Genomic sequence from Human 9q34, complete sequence
          Length = 38258

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   cacctttttctttccttcta 127
             ||||||||||||||||||||
Sbjct: 28925 cacctttttctttccttcta 28944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,214,698
Number of Sequences: 3902068
Number of extensions: 5214698
Number of successful extensions: 124150
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123746
Number of HSP's gapped (non-prelim): 404
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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