ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 50 1e-06
2LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 48 7e-06
3LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 47 9e-06
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 46 3e-05
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 40 0.001
6LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 32 0.30
7LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 32 0.39
8LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 32 0.51
9LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 31 0.67
10LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 31 0.67
11LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 31 0.67
12LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 31 0.67
13LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 29 2.5
14LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 28 4.3
15LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 28 4.3
16FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3) 28 5.7
17NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.7
18NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.7
19SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP) 28 7.4
20SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP) 28 7.4
21CB024_HUMAN (Q9BV87) Protein C2orf24 28 7.4
22KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 27 9.7
23ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator... 27 9.7

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYPNTSDH G A GLTA+GIPNSISI
Sbjct: 836 LLYPNTSDHKGAAAGLTAKGIPNSISI 862



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           L++PNTSD+ G AEG+TARGIPNSISI
Sbjct: 837 LMFPNTSDNKGAAEGITARGIPNSISI 863



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYPNTSD TG A G+TA+GIPNSISI
Sbjct: 840 LLYPNTSDVTGAAAGITAKGIPNSISI 866



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYPNTSD  G A GL+ARGIPNSISI
Sbjct: 844 LLYPNTSDLKGDAAGLSARGIPNSISI 870



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/28 (75%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = -2

Query: 336 LLYPNTSDHTGQ-AEGLTARGIPNSISI 256
           LLYPNTSD T +  +GLTA GIPNSISI
Sbjct: 850 LLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = -2

Query: 327 PNTSDHTGQAEGLTARGIPNSISI 256
           P T  H    EGLT RGIPNSISI
Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYP++       EGLT RGIPNSISI
Sbjct: 846 LLYPSSE------EGLTCRGIPNSISI 866



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LL+PN+       EGLT RGIPNSISI
Sbjct: 846 LLHPNS-------EGLTCRGIPNSISI 865



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYP++       EGLT RGIPNSISI
Sbjct: 841 LLYPSSK------EGLTFRGIPNSISI 861



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYP++       EGLT RGIPNSISI
Sbjct: 833 LLYPSSE------EGLTFRGIPNSISI 853



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -2

Query: 327 PNTSDHTGQAEGLTARGIPNSISI 256
           P T  H    EGLT +GIPNSISI
Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LLYP++       EGLT RGIPNSISI
Sbjct: 819 LLYPSSE------EGLTFRGIPNSISI 839



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 309 TGQAEGLTARGIPNSISI 256
           T + EGLT RGIPNSISI
Sbjct: 845 TCEDEGLTFRGIPNSISI 862



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 297 EGLTARGIPNSISI 256
           EGLT RGIPNSISI
Sbjct: 844 EGLTFRGIPNSISI 857



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 336 LLYPNTSDHTGQAEGLTARGIPNSISI 256
           LL+P +       EGLT +GIPNS+SI
Sbjct: 839 LLFPTSE------EGLTGKGIPNSVSI 859



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>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)|
          Length = 581

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 327 PNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVCVCDR 163
           PN + HT Q  AE   A+ +P   S  S   R      L  LC P +  P  AC  +C+ 
Sbjct: 59  PNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKLLCET 118

Query: 162 ELCRCMNN 139
               CM N
Sbjct: 119 VRGECMEN 126



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 183 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 46
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 183 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 46
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 328 PKHLRPHGTGRGAHRQGHPE 269
           P  L  H   +G HRQGHPE
Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259



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>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 328 PKHLRPHGTGRGAHRQGHPE 269
           P  L  H   +G HRQGHPE
Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259



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>CB024_HUMAN (Q9BV87) Protein C2orf24|
          Length = 410

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 267 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 103
           ++++ S  V  + L L C P    P+L     C  E C     +C+ +  N  +C  G +
Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303

Query: 102 GMRKL 88
           G+R L
Sbjct: 304 GLRSL 308



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>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 88  ELPHADQTRRARTLIALIIHAPAQLSV 168
           ELP  D TR +RTL  L+ HAP  + +
Sbjct: 7   ELPAPDATRISRTLSYLLRHAPQTIGL 33



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>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 289 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 203
           HR    EQH+    A+PSS+P  F  +LS+L
Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,247,921
Number of Sequences: 219361
Number of extensions: 959142
Number of successful extensions: 2418
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2411
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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