ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HUTU_XANCP (P58988) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 29 5.2
2HUTU_XANAC (P58987) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 29 5.2
3RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 29 5.2
4CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOA... 28 8.8
5CLAT_MOUSE (Q03059) Choline O-acetyltransferase (EC 2.3.1.6) (CH... 28 8.8
6NINAC_DROME (P10676) Neither inactivation nor afterpotential pro... 28 8.8

>HUTU_XANCP (P58988) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 555

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
 Frame = -3

Query: 414 DGRRLQRWTD-----------PARVRWRGVSRQNRGGLGLNAAAVQGVL 301
           D   L RW D           PAR+ W G+  ++R GL  NA    G L
Sbjct: 384 DDAHLHRWLDMAAEKIAFQGLPARICWVGLGDRHRLGLAFNAMVRSGEL 432



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>HUTU_XANAC (P58987) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 555

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
 Frame = -3

Query: 414 DGRRLQRWTD-----------PARVRWRGVSRQNRGGLGLNAAAVQGVL 301
           D   L RW D           PAR+ W G+  ++R GL  NA    G L
Sbjct: 384 DDAHLHRWLDMAADKIAFQGLPARICWVGLGDRHRLGLAFNAMVRSGEL 432



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 344  EEVLDLTL-LPSKECLVSAVRVGLNCTRAAPYERMSMRDAAAELRTIRDA 198
            E V+D  L L  KE +   + +GL CT   P  R SMR     L+ +  A
Sbjct: 921  EPVIDPKLDLKFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGA 970



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>CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 639

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 231 RGRRAAHDQRCLCPGLNRGYCWLLGFSSGRDVQCSTVC 118
           R  +  H   C   G NR Y   L F  GRD  C  VC
Sbjct: 294 RALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVC 331



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>CLAT_MOUSE (Q03059) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 640

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 231 RGRRAAHDQRCLCPGLNRGYCWLLGFSSGRDVQCSTVC 118
           R  +  H   C   G NR Y   L F  GRD  C  VC
Sbjct: 295 RALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVC 332



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>NINAC_DROME (P10676) Neither inactivation nor afterpotential protein C (EC|
            2.7.11.1)
          Length = 1501

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/18 (66%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = -1

Query: 281  GLN-CTRAAPYERMSMRD 231
            GLN CTRA P+ER++MR+
Sbjct: 1155 GLNKCTRAVPFERINMRE 1172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,933,113
Number of Sequences: 219361
Number of extensions: 1140043
Number of successful extensions: 2990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2990
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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