ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSRB2_HUMAN (Q9Y3D2) Methionine-R-sulfoxide reductase B2 (EC 1.8... 30 1.2
2OPGD_XANCP (Q8P3C6) Glucans biosynthesis protein D precursor 30 1.6
3DYH11_HUMAN (Q96DT5) Ciliary dynein heavy chain 11 (Axonemal bet... 28 6.0

>MSRB2_HUMAN (Q9Y3D2) Methionine-R-sulfoxide reductase B2 (EC 1.8.4.-)|
          Length = 201

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 115 RASPSSKRHSRFLWMVEQLVLEVGPERFILG 207
           RA+   +RH R LW++  L L   P R + G
Sbjct: 12  RAAAPERRHGRLLWLLRGLTLGTAPRRAVRG 42



to top

>OPGD_XANCP (Q8P3C6) Glucans biosynthesis protein D precursor|
          Length = 533

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 86  GKNDRKKDWIELVPQASVTVGFSGWL--SSWFWRSVLN 193
           G+NDR+ DW +  P+   T G + W     W WR + N
Sbjct: 275 GENDRRMDW-DWRPEIHDTDGLAMWTGGGEWIWRPLCN 311



to top

>DYH11_HUMAN (Q96DT5) Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy|
            chain 11)
          Length = 4523

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 2    KIMIFFSPVGRTVCFAS*IKVKLTQTPKGKNDRKKDWIELVPQASV 139
            KI++ FSPVGRT      ++V+  + P   N    DW    PQ ++
Sbjct: 2987 KIILCFSPVGRT------LRVRARKFPAIVNCTAIDWFHAWPQEAL 3026


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,889,196
Number of Sequences: 219361
Number of extensions: 778918
Number of successful extensions: 2072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2071
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top