ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VD05_VARV (P33069) Protein D5 28 7.6
2SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat... 27 10.0

>VD05_VARV (P33069) Protein D5|
          Length = 785

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 130 NLEENNNKIASCAKLDYYYYCSTLEQLYS*VQ*T*HLHPHQYLVEDDAV*SVSRISYDHS 309
           +L+ENN        +DY   C+  ++         H HPHQ  +E+DA+  + +    HS
Sbjct: 263 DLDENNFTTVPLV-IDYVTPCALCKKRS-------HKHPHQLSLENDAI-RIYKTGNPHS 313

Query: 310 C 312
           C
Sbjct: 314 C 314



to top

>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)|
           (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus
           and actin connecting element protein) (NUANCE protein)
          Length = 6885

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 83  DCVGSDASQE*QRIQEIWKKITTKSLPALN 172
           D VGS  S+E +R+ + W+K+ +K+   +N
Sbjct: 641 DVVGSSISKELRRLNKRWRKLVSKTQLEMN 670


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,650,027
Number of Sequences: 219361
Number of extensions: 635366
Number of successful extensions: 1392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top