ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl12e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.5
2gb|AC009327.8|ATAC009327 Arabidopsis thaliana chromosome III BAC... 40 2.5
3emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chr... 40 2.5
4emb|AL139352.16| Human DNA sequence from clone RP11-445H22 on ch... 40 2.5
5emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G... 40 2.5
6gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57B... 40 2.5
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
8dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
9dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
10dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
11emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chro... 40 2.5

>ref|XM_468330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2748

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 153  tcaagctctgacctcccggatgtagctggggctcat 188
            ||||||||||| ||| ||||||||| | ||||||||
Sbjct: 2748 tcaagctctgagctcacggatgtagttagggctcat 2713



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>gb|AC009327.8|ATAC009327 Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence,
             complete sequence
          Length = 89934

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     gttcaaggcttcaagctagt 26
             ||||||||||||||||||||
Sbjct: 33007 gttcaaggcttcaagctagt 32988



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>emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 84016

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    agagaatacatttctggata 62
             ||||||||||||||||||||
Sbjct: 52699 agagaatacatttctggata 52718



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>emb|AL139352.16| Human DNA sequence from clone RP11-445H22 on chromosome 20 Contains the
             5' end of the ADA gene for adenosine deaminase, a novel
             gene, the 3' end of a novel gene, the WISP2 gene for WNT1
             inducible signaling pathway protein 2 and a CpG island,
             complete sequence
          Length = 107260

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    agcagagaatacatttctgg 59
             ||||||||||||||||||||
Sbjct: 65055 agcagagaatacatttctgg 65074



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>emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G20 on chromosome 1 Contains part
             of the C1orf21 gene for chromosome 1 open reading frame
             21, a novel pseudogene and a novel transcript, complete
             sequence
          Length = 206089

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    agagaatacatttctggata 62
             ||||||||||||||||||||
Sbjct: 17985 agagaatacatttctggata 17966



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>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete
             sequence
          Length = 190514

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    acagagcagagaatacattt 55
             ||||||||||||||||||||
Sbjct: 43192 acagagcagagaatacattt 43173



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 153      tcaagctctgacctcccggatgtagctggggctcat 188
                ||||||||||| ||| ||||||||| | ||||||||
Sbjct: 34654852 tcaagctctgagctcacggatgtagttagggctcat 34654817



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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E04
          Length = 94096

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 153   tcaagctctgacctcccggatgtagctggggctcat 188
             ||||||||||| ||| ||||||||| | ||||||||
Sbjct: 11803 tcaagctctgagctcacggatgtagttagggctcat 11768



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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 153    tcaagctctgacctcccggatgtagctggggctcat 188
              ||||||||||| ||| ||||||||| | ||||||||
Sbjct: 121467 tcaagctctgagctcacggatgtagttagggctcat 121432



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>dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A08, full
           insert sequence
          Length = 876

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 153 tcaagctctgacctcccggatgtagctggggctcat 188
           ||||||||||| ||| ||||||||| | ||||||||
Sbjct: 623 tcaagctctgagctcacggatgtagttagggctcat 588



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>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete
             sequence
          Length = 198991

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aattttacagagcagagaat 49
             ||||||||||||||||||||
Sbjct: 90954 aattttacagagcagagaat 90973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,584,301
Number of Sequences: 3902068
Number of extensions: 1584301
Number of successful extensions: 116462
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116409
Number of HSP's gapped (non-prelim): 53
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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