ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009009.1| Triticum aestivum clone wdk3c.pk005.b17:fis, full insert mRNA sequence Length = 1620 Score = 337 bits (170), Expect = 1e-89 Identities = 255/282 (90%), Gaps = 1/282 (0%) Strand = Plus / Minus Query: 2 caggataaacacctcagcattcaagggtaagaaa-gcatcacaactgcagcttattcggg 60 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1515 caggataaatacctcagcattcaagggtaagaaaagcatcacaactgcagcttattcggg 1456 Query: 61 attcaaaatcaccatcatctttaatccggtgtgaacaaaactgtctcaaacaacaatttt 120 |||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| Sbjct: 1455 attcgaaatcaccataatctttaatccggtgtgtacaaaactgtctcagacaacaagttt 1396 Query: 121 agtaagtctacaaggcaaattcctgagttcagccaataacacgcctttggttgaaccctt 180 | | |||||||||||||||||| ||||||||||| |||||| ||| ||||||||||| | Sbjct: 1395 aatgagtctacaaggcaaattctcgagttcagccagtaacacacctctggttgaacccct 1336 Query: 181 cggacactgctgtaggcaatttaagattttattgcggaagggggttgccatgttatcatt 240 |||| |||||||||| |||| |||||||||||| | ||||||||| ||||||||||| Sbjct: 1335 cggaaactgctgtagagaattcaagattttattgtgcgagggggttgaaatgttatcatt 1276 Query: 241 cacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||| || || ||||||||||||||||||||| Sbjct: 1275 cacttcagttttgttactgcggcatgtatggcatctgcaaga 1234
>dbj|AB110193.1| Oryza sativa (japonica cultivar-group) mRNA for aspartate aminotransferase, complete cds, clone: 22C4AG009 Length = 1502 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1285 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1238
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 31992352 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 31992399
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 34166 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 34213
>dbj|D14673.1|RICAAT Oryza sativa (japonica cultivar-group) mRNA for aspartate aminotransferase, complete cds Length = 1514 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1297 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1250
>dbj|AK104829.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H04, full insert sequence Length = 1519 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1302 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1255
>dbj|AK103586.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B14, full insert sequence Length = 1888 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1671 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1624
>dbj|AK103133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120D06, full insert sequence Length = 1525 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1308 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1261
>dbj|AK099338.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026J06, full insert sequence Length = 1626 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1409 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1362
>dbj|AK067557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112H20, full insert sequence Length = 1668 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1451 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 1404
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 235 atcattcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 |||||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 89079 atcattcacttcagttttgtgactgcggcatggattgcatctgcaaga 89126
>emb|X63429.1|PMAAT2 P.miliaceum mRNA for aspartate aminotransferase (pcAAT2) Length = 1514 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 240 tcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 ||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 1276 tcacttcagttgagtaactgcagcgtgtatggcatctgcaaga 1234
>dbj|D25322.1|PNIAATA Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds Length = 7822 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 240 tcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 ||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 6582 tcacttcagttgagtaactgcagcgtgtatggcatctgcaaga 6540
>gb|AC084116.7| Homo sapiens chromosome 8, clone RP11-103H7, complete sequence Length = 185339 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Minus Query: 93 gaacaaaactgtctcaaacaacaa 116 |||||||||||||||||||||||| Sbjct: 148545 gaacaaaactgtctcaaacaacaa 148522
>gb|AC021396.6|AC021396 Homo sapiens, clone RP11-28I2, complete sequence Length = 200673 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Minus Query: 93 gaacaaaactgtctcaaacaacaa 116 |||||||||||||||||||||||| Sbjct: 43694 gaacaaaactgtctcaaacaacaa 43671
>ref|XM_463436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 46.1 bits (23), Expect = 0.060 Identities = 38/43 (88%) Strand = Plus / Minus Query: 240 tcacttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 ||||||||||||||| || || ||||| || |||||||||||| Sbjct: 1224 tcacttcagttttgtgactgcggcatggattgcatctgcaaga 1182
>gb|BT016540.1| Zea mays clone Contig373 mRNA sequence Length = 1698 Score = 46.1 bits (23), Expect = 0.060 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 ||||||| ||||| ||||| |||||||||||||||||| Sbjct: 1422 ttcagttgagtaactgcagcgtgtatggcatctgcaaga 1384
>gb|BT016854.1| Zea mays clone Contig687 mRNA sequence Length = 1481 Score = 46.1 bits (23), Expect = 0.060 Identities = 35/39 (89%) Strand = Plus / Plus Query: 244 ttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 ||||||| ||||| ||||| |||||||||||||||||| Sbjct: 637 ttcagttgagtaactgcagcgtgtatggcatctgcaaga 675
>gb|AY103658.1| Zea mays PCO118382 mRNA sequence Length = 1690 Score = 46.1 bits (23), Expect = 0.060 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ttcagttttgtaaccgcagcatgtatggcatctgcaaga 282 ||||||| ||||| ||||| |||||||||||||||||| Sbjct: 1447 ttcagttgagtaactgcagcgtgtatggcatctgcaaga 1409
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 aacaacaattttagtaagtcta 130 |||||||||||||||||||||| Sbjct: 1312283 aacaacaattttagtaagtcta 1312262
>gb|U33846.1|SAU33846 Sulfolobus acidocaldarius DNA polymerase gene, complete cds Length = 3097 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 aacaacaattttagtaagtcta 130 |||||||||||||||||||||| Sbjct: 677 aacaacaattttagtaagtcta 656
>gb|AC152493.3| Rhinolophus ferrumequinum clone VMRC7-244O22, complete sequence Length = 75463 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 aagattttattgcggaagggg 223 ||||||||||||||||||||| Sbjct: 32021 aagattttattgcggaagggg 32041 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 tttaagattttattgcggaagggg 223 ||||||||||||||| |||||||| Sbjct: 47474 tttaagattttattggggaagggg 47497
>dbj|AK038675.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230054C15 product:unclassifiable, full insert sequence Length = 2669 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 aaggcaaattcctgagttcag 152 ||||||||||||||||||||| Sbjct: 944 aaggcaaattcctgagttcag 924
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 aagattttattgcggaagggg 223 ||||||||||||||||||||| Sbjct: 835329 aagattttattgcggaagggg 835349 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 tttaagattttattgcggaagggg 223 ||||||||||||||| |||||||| Sbjct: 850782 tttaagattttattggggaagggg 850805
>gb|AC012099.4|AC012099 Homo sapiens chromosome 14 clone RP11-45G3 containing neurexin III gene, partial cds, complete sequence Length = 157871 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 caaaactgtctcaaacaacaa 116 ||||||||||||||||||||| Sbjct: 101355 caaaactgtctcaaacaacaa 101335
>gb|AC153827.5| Mus musculus 6 BAC RP23-58O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 234403 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aaggcaaattcctgagttcag 152 ||||||||||||||||||||| Sbjct: 91674 aaggcaaattcctgagttcag 91694
>gb|AC153875.3| Mus musculus 6 BAC RP23-218N14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187367 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 aaggcaaattcctgagttcag 152 ||||||||||||||||||||| Sbjct: 25010 aaggcaaattcctgagttcag 24990
>gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, complete sequence Length = 218949 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 caaggcaaattcctgagttca 151 ||||||||||||||||||||| Sbjct: 156419 caaggcaaattcctgagttca 156439
>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete sequence Length = 197765 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aacaaaactgtctcaaacaa 113 |||||||||||||||||||| Sbjct: 120387 aacaaaactgtctcaaacaa 120368
>gb|AC122238.4| Mus musculus BAC clone RP23-143D4 from chromosome 10, complete sequence Length = 188476 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aggcaaattcctgagttcag 152 |||||||||||||||||||| Sbjct: 100847 aggcaaattcctgagttcag 100828
>gb|AC183752.3| Rhinolophus ferrumequinum clone VMRC7-380K18, complete sequence Length = 39225 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 tttaagattttattgcggaagggg 223 ||||||||||||||| |||||||| Sbjct: 3693 tttaagattttattggggaagggg 3716
>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence Length = 131025 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gattcaaaatcaccatcatc 79 |||||||||||||||||||| Sbjct: 38960 gattcaaaatcaccatcatc 38941
>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence Length = 134901 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gattcaaaatcaccatcatc 79 |||||||||||||||||||| Sbjct: 118939 gattcaaaatcaccatcatc 118958
>gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's Hospital Oakland Research Institute) complete sequence Length = 214386 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aaaactgtctcaaacaacaa 116 |||||||||||||||||||| Sbjct: 199187 aaaactgtctcaaacaacaa 199206
>emb|AL109657.8|HSDJ842G6 Human DNA sequence from clone RP5-842G6 on chromosome 20 Contains the 3' end of the C20orf7 gene for chromosome 20 open reading frame 7 (FLJ22324) and the 3' end of the C20orf50 gene for chromosome 20 open reading frame 50 (dJ631M13.1, similar to SEL1L (DKFZp434C1826)), complete sequence Length = 100272 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 gaacaaaactgtctcaaacaacaa 116 |||||| ||||||||||||||||| Sbjct: 31699 gaacaagactgtctcaaacaacaa 31676
>emb|BX470172.19| Zebrafish DNA sequence from clone DKEY-3H3 in linkage group 5, complete sequence Length = 243270 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gtgtgaacaaaactgtctcaaaca 112 ||||||||||||||| |||||||| Sbjct: 8743 gtgtgaacaaaactgcctcaaaca 8766
>emb|AL714011.12| Mouse DNA sequence from clone RP23-380O17 on chromosome 4 Contains a CpG island, complete sequence Length = 166093 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aggcaaattcctgagttcag 152 |||||||||||||||||||| Sbjct: 2837 aggcaaattcctgagttcag 2856
>gb|AC090651.3| Homo sapiens chromosome 15 clone RP11-344A16 map 15q21.3, complete sequence Length = 208230 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gaacaaaactgtctcaaacaacaa 116 |||||||||||||||||| ||||| Sbjct: 161689 gaacaaaactgtctcaaaaaacaa 161712
>gb|AC113609.3| Homo sapiens BAC clone RP11-174B22 from 4, complete sequence Length = 83881 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 acaaaactgtctcaaacaacaattttag 122 ||||||||||| |||||||| ||||||| Sbjct: 30780 acaaaactgtcacaaacaaccattttag 30753
>gb|AC104384.3| Homo sapiens chromosome 8, clone CTD-2381M20, complete sequence Length = 163996 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tctacaaggcaaattcctga 146 |||||||||||||||||||| Sbjct: 8025 tctacaaggcaaattcctga 8044
>gb|AC025916.5| Homo sapiens chromosome 15 clone CTD-2323M6 map 15q21.3, complete sequence Length = 109403 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gaacaaaactgtctcaaacaacaa 116 |||||||||||||||||| ||||| Sbjct: 57910 gaacaaaactgtctcaaaaaacaa 57933
>gb|AC087808.2| Homo sapiens chromosome 8, clone RP11-89A16, complete sequence Length = 189878 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tctacaaggcaaattcctga 146 |||||||||||||||||||| Sbjct: 76258 tctacaaggcaaattcctga 76277
>emb|BX248117.9| Zebrafish DNA sequence from clone CH211-226D5, complete sequence Length = 181542 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 acaattttagtaagtctaca 132 |||||||||||||||||||| Sbjct: 108309 acaattttagtaagtctaca 108290
>dbj|AP001302.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24A2 Length = 30648 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tgtctcaaacaacaatttta 121 |||||||||||||||||||| Sbjct: 5891 tgtctcaaacaacaatttta 5910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,773,869 Number of Sequences: 3902068 Number of extensions: 2773869 Number of successful extensions: 57769 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57682 Number of HSP's gapped (non-prelim): 86 length of query: 282 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 260 effective length of database: 17,147,199,772 effective search space: 4458271940720 effective search space used: 4458271940720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
