ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl12e09 |
|---|---|
| Clone Library Name | barley_pub |
>MAS_HUMAN (P04201) MAS proto-oncogene| Length = 325 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 88 LRENIWAKIISPYVLIVIQRYYMLVFLATAMNILQLA-----SRFTNYYHIALVLLPVTS 252 +R+N WA S ++++ + + A M +L L S F N +HI+L+ + S Sbjct: 214 IRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRLLYLLYYEYWSTFGNLHHISLLFSTINS 273 Query: 253 ARAPALF 273 + P ++ Sbjct: 274 SANPFIY 280
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 31.2 bits (69), Expect = 0.66 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +3 Query: 165 SSNSYEHTAAGKPIH*LLSHSTGAVTSNLCKSTCLVQNDGTCWNPSI*SPC 317 S +++T AG P LLS G V NLC ++ + D WNP+ C Sbjct: 887 SIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMD-PAWNPAAEDQC 936
>MAS_RAT (P12526) MAS proto-oncogene| Length = 324 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 88 LRENIWAKIISPYVLIVIQRYYMLVFLATAMNILQLA-----SRFTNYYHIALVLLPVTS 252 +R+N WA S ++++ + + A M +L L S F N ++I+L+ + S Sbjct: 213 IRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRVLYLLYYEYWSTFGNLHNISLLFSTINS 272 Query: 253 ARAPALF 273 + P ++ Sbjct: 273 SANPFIY 279
>MAS_MOUSE (P30554) MAS proto-oncogene| Length = 324 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 88 LRENIWAKIISPYVLIVIQRYYMLVFLATAMNILQLA-----SRFTNYYHIALVLLPVTS 252 +R+N WA S ++++ + + A M +L L S F N ++I+L+ + S Sbjct: 213 IRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRVLYLLYYEYWSAFGNLHNISLLFSTINS 272 Query: 253 ARAPALF 273 + P ++ Sbjct: 273 SANPFIY 279
>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (RUSH-1) Length = 1005 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 165 SSNSYEHTAAGKPIH*LLSHSTGAVTSNLCKSTCLVQNDGTCWNPS 302 S +++T AG P LLS G V NLC ++ + D WNP+ Sbjct: 890 SIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMD-PAWNPA 934
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 282 HHFEQGRCSCRGYW*QHQCYVIV 214 HHF RCS RG+W H Y+++ Sbjct: 1213 HHFR--RCSFRGFWLTHHLYILL 1233
>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated| protein 5.10) (Ultrahigh sulfur keratin-associated protein 5.10) Length = 202 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = +3 Query: 225 STGAVTSNLCKSTCLVQNDGTCWNPSI*SPCC 320 S G N CK C G+C S +PCC Sbjct: 136 SCGCSQCNCCKPCCCSSGCGSCCQSSCCNPCC 167
>CSF1_ASHGO (Q74ZX0) Protein CSF1| Length = 2887 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Frame = +1 Query: 187 LQLASRFTNYYHIALVLLPV------TSARAPALFKMMEPVGIP 300 L+ + RF NYY A V L T A LFK++E +GIP Sbjct: 798 LEASLRFLNYYVDAAVSLDSIYFKRHTDIDARTLFKVIEDIGIP 841
>Y684_MYCPN (P75109) Protein MG468 homolog (K05_orf1882)| Length = 1882 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 151 YMLVFLATAMNILQLASRFTNYYHIALVLLPVTSARAPALFKMMEPV 291 + ++FL T+ ILQL++ N Y + + APA+FK PV Sbjct: 27 FSIIFLETS--ILQLSNNLVNTYTALVQKTNSSDIVAPAIFKESSPV 71
>RN139_MOUSE (Q7TMV1) RING finger protein 139| Length = 668 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +1 Query: 52 FAGSQRRFC-GRILRENIWAKIISPYVLIVIQRYYMLVFLATAMNILQLASRFTNYY 219 + SQ RFC G + + ++S VLI+ QR ++ ++ +L S NYY Sbjct: 42 YDSSQSRFCIGLQIFLRLLGIVVSSIVLILSQRSLFKFYMYSSAFLLAATSVLVNYY 98
>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (DNA binding protein/plasminogen activator inhibitor 1 regulator) (Helicase-like tran Length = 1009 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 165 SSNSYEHTAAGKPIH*LLSHSTGAVTSNLCKSTCLVQNDGTCWNPSI*SPC 317 S +++T AG P LLS G V NL ++ + D WNP+ C Sbjct: 893 SIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMD-PAWNPAAEDQC 942
>YLC1_CAEEL (Q8WQG1) Hypothetical protein C35D10.1| Length = 222 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 223 IALVLLPVTSARAPALFKMMEPVGIPQYDLP 315 + +++LP +A P L K ME + +P+ D+P Sbjct: 160 VVMLILPKMTANDPELKKEMENMQMPKVDMP 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,513,309 Number of Sequences: 219361 Number of extensions: 1042613 Number of successful extensions: 2626 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2626 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
